Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1385 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Sphingobium sp. HT1-2

 Score = 1580 bits (4092), Expect = 0.0
 Identities = 806/1360 (59%), Positives = 1027/1360 (75%), Gaps = 33/1360 (2%)

Query: 8    KKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQY--GLEAAFRSVFPIQSYNGN 65
            KKRIRK FG   +V+ +P L+ +Q +S+E+F+  +P   Y  GLE   RSVFPI+ + G 
Sbjct: 14   KKRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSNPAIGYVSGLEKTLRSVFPIRDFAGT 73

Query: 66   SELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGT--VKDIKEQEVY 123
            +E+ +V Y L +P FDV+EC+ RG+TY+ P+RV LRL++F+ DA   T  V DIKEQ+VY
Sbjct: 74   AEMDFVHYELEDPKFDVEECRQRGITYAAPMRVTLRLIVFEVDADTETRSVLDIKEQDVY 133

Query: 124  MGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW 183
            MG++PLMT+NGTF++NGTERVIVSQ+HRSPGV FD D+GKTHSSGK L+ AR+IPYRGSW
Sbjct: 134  MGDMPLMTQNGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHSSGKYLFAARVIPYRGSW 193

Query: 184  LDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQTLMMELVP 243
            LDFEFD KD + VRIDR+RKLP + +L ALG T+ EIL  F+ KV F   +    +    
Sbjct: 194  LDFEFDAKDIVNVRIDRKRKLPVTALLYALGLTAEEILGQFYNKVTFVRGEGGWQIPYTA 253

Query: 244  ERLRGETATFDI--EADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGKVSAKDY 301
            E  RG    FDI     G+V    G +++ R   + EKDG+  + +P E + G+ SA D 
Sbjct: 254  EAWRGLKPAFDIVDAKSGEVVFAAGHKISPRAANKAEKDGLATLLIPTEEVYGRYSAYDL 313

Query: 302  VNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDSTTDRIS 361
            +NE TGE+ I A  E+S E L  L +AG  +LE+L  + +  GP++  TL+ D   +R  
Sbjct: 314  INEKTGEIYIEAGDEVSPENLEKLDKAGIDRLELLDIDHVTTGPWIRNTLKADKAEERDQ 373

Query: 362  ALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAEEQGTLD 421
            AL +IYR+MRPGEPPTKE AE+LF  LFF  ERYDLS VGR+K N  +  +  +   TL 
Sbjct: 374  ALSDIYRVMRPGEPPTKETAEALFAGLFFDPERYDLSAVGRVKMNMRLDLDAEDTVTTLR 433

Query: 422  EVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL 481
              DI+ V+K+L+++++GKGE+DDID+LGNRR+RSVGE+ ENQ+RVGL+R+ERAVKER+S 
Sbjct: 434  VEDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVKERMSS 493

Query: 482  GDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRE 541
             D+  VMP DLINAKP  AAV+EFFGSSQLSQFMDQ NPLSEVTHKRR+SALGPGGLTRE
Sbjct: 494  VDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRE 553

Query: 542  RAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVNGVVTD 601
            RAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ F+R N+YGF+ETPYR+V++G VT+
Sbjct: 554  RAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRVNKYGFIETPYRKVIDGKVTN 613

Query: 602  EVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDVATNQVV 661
            +V YLSA+EE +  IAQANA+   +G  A++L++AR+ GE  + PR+++  MDV+  Q+V
Sbjct: 614  DVVYLSAMEEAKHTIAQANAETNADGTLAEDLISAREAGEFLMAPRDNITLMDVSPKQLV 673

Query: 662  SIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAKRG 721
            S+AASLIPFLE+DDANRALMG+NMQRQAVP +R+E P VGTG+E  VA DSG    AKR 
Sbjct: 674  SVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGTVARDSGAAIAAKRA 733

Query: 722  GVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARGD 781
            G+I  VDA+RIV++    ++ PG++G+DIY L K+ RSNQ+TCINQRP V  GE V  GD
Sbjct: 734  GIIDQVDATRIVIRAT-GDVEPGQSGVDIYTLQKFQRSNQDTCINQRPLVKVGELVQAGD 792

Query: 782  VLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVAR 841
            V+ADGPST+ GELALG+N+ +AFMPWNGYN+EDSIL+SER+V+DD FT+IHI+E   +AR
Sbjct: 793  VIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVKDDVFTSIHIEEFEVMAR 852

Query: 842  DTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKL 901
            DTKLG E+IT DIPNVGE AL  LDE+GIVYIGAEV+ GDILVGK+TPKGE+ +TPEEKL
Sbjct: 853  DTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITPKGESPMTPEEKL 912

Query: 902  LRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDLT 961
            LRAIFGEKASDV+DTSLR+P  VAGTV++V+VF R G++KD+RA+ IE+ ++    KD  
Sbjct: 913  LRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDKDERAMAIEREEIDRLAKDRE 972

Query: 962  EEFQILEGGLLARVRSVLLAGGYT-------------EAKLGSIERKKWLEQTLENEELQ 1008
            +E  IL      R++ +L+    T             EA LG +ER +W +  +E++  Q
Sbjct: 973  DERGILNRATFNRLQEMLIGQTATAAPKGVKKGVVIDEALLGEVERHEWWKFAVEDDVRQ 1032

Query: 1009 NQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068
              +E +  QYDE      +KFE +  K+ +GD+L PGVLK+VKV++AVKR++QPGDKMAG
Sbjct: 1033 TGIEAVKAQYDEAVKLIVEKFEDRVDKLQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAG 1092

Query: 1069 RHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKI 1128
            RHGNKG+IS+I P EDMP+ E+G PVD VLNPLGVPSRMN+GQI E HLG AA+G+G +I
Sbjct: 1093 RHGNKGIISRILPAEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFETHLGWAARGLGAQI 1152

Query: 1129 NQMIKEQQEL----------AKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAG 1178
             Q +   +E             ++E L+ +Y  GD     +I   S E +  LA N+RAG
Sbjct: 1153 GQALDAWREANPNPEAGQPPEAVKELLKTIY--GD-NYVAEIEARSPEQIVELAQNVRAG 1209

Query: 1179 LPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLV 1238
            +P+ATPVFDGA ES + AML+LA L  SGQ++LFDGRTGD F+R VTVGY Y+LKL+HLV
Sbjct: 1210 VPMATPVFDGAVESDVSAMLKLAGLDESGQVSLFDGRTGDVFDRKVTVGYKYVLKLHHLV 1269

Query: 1239 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1298
            DDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWAL+AYGAAYTLQEMLTVKSDDV 
Sbjct: 1270 DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVV 1329

Query: 1299 GRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIEL 1338
            GRTK+Y+ IV G+   E G+PESFNVL+KE+RSLG+N+EL
Sbjct: 1330 GRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVEL 1369