Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas putida KT2440

 Score = 1932 bits (5005), Expect = 0.0
 Identities = 970/1359 (71%), Positives = 1145/1359 (84%), Gaps = 20/1359 (1%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIE----QDPEGQYGLEAAFRSV 56
            M YSYTEKKRIRKDF   P V+D+PYLL+IQLDS+ +F++    +D     GL AAF+SV
Sbjct: 1    MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSV 60

Query: 57   FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKD 116
            FPI SY+GN+ L+YV YRLGEP FDVKEC +RGVT++ PLRVK+RL+IFDK++    +KD
Sbjct: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD 120

Query: 117  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176
            IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFD D+GKTHSSGK+LY+ARI
Sbjct: 121  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI 180

Query: 177  IPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQT 236
            IPYRGSWLDFEFDPKD ++VRIDRRRKLPAS++LRALG ++ E+L+ F+    F +  + 
Sbjct: 181  IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK 240

Query: 237  LMMELVPERLRGETATFDIEAD-GKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGK 295
            L +ELVP+RLRGE A  DI  + GKV VE+GRR+TARHI QLEK GV  ++VP+EY++G+
Sbjct: 241  LSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR 300

Query: 296  VSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDS 355
             +AK  V+ ATGE++   N E++ E L  +++A   ++E L+TND+D GPF+S+TL++D+
Sbjct: 301  TTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKIDT 360

Query: 356  TTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAE 415
            T++++ ALVEIYRMMRPGEPPTK+AAE+LF +LFFSAERYDLS VGRMKFN  IGR + E
Sbjct: 361  TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE 420

Query: 416  EQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475
              G L + DI+EV+K L+ IRNGKG VDDIDHLGNRR+R VGEMAENQFRVGLVRVERAV
Sbjct: 421  GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV 480

Query: 476  KERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP 535
            KERLS+ + + +MPQDLINAKP++AAVKEFFGSSQLSQFMDQNNPLSE+THKRR+SALGP
Sbjct: 481  KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP 540

Query: 536  GGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVV 595
            GGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+A+AR N+YGFLE+PYR V 
Sbjct: 541  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK 600

Query: 596  NGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDV 655
             GVV+D++ +LSAIEE   VIAQA+A + ++    DELV  R   E  +   E V  MDV
Sbjct: 601  EGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTLMDV 660

Query: 656  ATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVT 715
            +  QVVS+AASLIPFLEHDDANRALMG+NMQRQAVPTLR++KPLVGTG+ERNVA DSGV 
Sbjct: 661  SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC 720

Query: 716  AVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGE 775
             VA+RGGVI SVDASRIVV+V ++E+  GEAG+DIYNLTKYTRSNQNTCINQRP V  G+
Sbjct: 721  VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD 780

Query: 776  PVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQE 835
             V RGD++ADGPSTD+GELALGQNMRIAFM WNG+NFEDSI +SERVVQ+DRFTTIHIQE
Sbjct: 781  KVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE 840

Query: 836  LSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQL 895
            L+CVARDTKLG EEITADIPNVGEAAL+KLDE+GIVY+GAEV  GDILVGKVTPKGETQL
Sbjct: 841  LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL 900

Query: 896  TPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKE 955
            TPEEKLLRAIFGEKASDVKDTSLRVP    GTVIDVQVFTRDGVE+D RAL IE+MQL E
Sbjct: 901  TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDE 960

Query: 956  AKKDLTEEFQILEGGLLARVRSVL----LAGG--------YTEAKLGSIERKKWLEQTLE 1003
             +KDL EEF+I+EG    R+RS L    + GG         T+  L  +E  +W +  + 
Sbjct: 961  IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHGQWFKLRMA 1020

Query: 1004 NEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063
             + L  QLE+  +   + +   D KFE K+RK+ QGDDLAPGVLKIVKVYLA++RRIQPG
Sbjct: 1021 EDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG 1080

Query: 1064 DKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKG 1123
            DKMAGRHGNKGV+S I PVEDMP+D NG PVD+VLNPLGVPSRMN+GQILE HLGLAAKG
Sbjct: 1081 DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG 1140

Query: 1124 IGDKINQMIKEQQELAKLREFLQKVY-DLGDTRQRVDISELSDEDVRTLAHNLRAGLPVA 1182
            +G+KI++M++EQ++ A+LR FL +VY ++G  ++ +D  E +DE++  LA+NL+ G+P+A
Sbjct: 1141 LGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLD--EFTDEEILALANNLKKGVPMA 1198

Query: 1183 TPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKM 1242
            TPVFDGA E  IKAML+LADLP SGQ+ LFDGRTG+ FERPVTVGYMYMLKLNHLVDDKM
Sbjct: 1199 TPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKM 1258

Query: 1243 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1302
            HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK
Sbjct: 1259 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1318

Query: 1303 MYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341
            MYKNIVDG+H MEPGMPESFNVL+KEIRSLGI+I+LE E
Sbjct: 1319 MYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357