Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1290 a.a., DNA-directed RNA polymerase subunit beta from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 1119 bits (2895), Expect = 0.0
 Identities = 637/1380 (46%), Positives = 859/1380 (62%), Gaps = 150/1380 (10%)

Query: 12   RKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDP----EGQYGLEAAFRSVFPIQSYNGNSE 67
            R +F +   V+D P  L +Q+ SF+ F + +       Q GL   F   FPI     N  
Sbjct: 9    RINFASIKPVIDYPDFLDVQVQSFQDFFQLETPAENRAQEGLFKVFAENFPISDSRENFV 68

Query: 68   LQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIK--EQEVYMG 125
            L+++ Y +  P + V E   RG+TYS PL+ KLRL+  D+D      +D +  EQEV++G
Sbjct: 69   LEFIDYHIDPPKYSVDESIDRGLTYSVPLKAKLRLICNDEDN-----EDFETIEQEVFLG 123

Query: 126  EIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185
             IP MTE G+FVING ERVIVSQLHRSPGVFF   K   H++G  LY+ARIIP++GSW++
Sbjct: 124  NIPYMTEKGSFVINGAERVIVSQLHRSPGVFFAQSK---HTNGTKLYSARIIPFKGSWVE 180

Query: 186  FEFDPKDNLYVRIDRRRKLPASIILRALGK-TSAEILDIFFEKVNFEVKDQTLMMELVPE 244
            F  D  + +Y  IDR++K P + +LRA+G  T  +ILD+F           TL   +   
Sbjct: 181  FATDVNNVMYAYIDRKKKFPVTTLLRAIGYGTDKDILDLFGLSEEIPADKNTLKNSV--- 237

Query: 245  RLRGETATFDIEADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGKVSAKDYVNE 304
                                 GRR+ AR +R   +D V       +   G+V + D    
Sbjct: 238  ---------------------GRRLAARVLRTWTEDFV-------DEDTGEVVSID---- 265

Query: 305  ATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPF--MSETLRVDSTTDRISA 362
               E+I+  + EI+ E +  +  +G + + +L   +++   +  +  TL+ D++     A
Sbjct: 266  -RNEVILERDSEITPEDIDIILDSGVQSI-ILHRENVNIADYAIIYNTLQKDNSNSEQEA 323

Query: 363  LVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAEEQGTLDE 422
            + +IYR +R  E P  E A  + + LFFS +RYDL  VGR + N  +G +   E   L  
Sbjct: 324  VEQIYRQLRNTEAPDVETARDIIQKLFFSDKRYDLGEVGRYRINKKLGLDTNWEAKVLTN 383

Query: 423  VDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482
             DI+ ++K LI + N K  VDDIDHL NRR+R+VGE    QF VGL R+ R +KER+++ 
Sbjct: 384  EDIVLIVKYLIGLINSKAVVDDIDHLSNRRVRTVGEQLYAQFGVGLARMARTIKERMNVR 443

Query: 483  DLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRER 542
            D ++  P DLINA+ +S+ +  FFG++QLSQFMDQ NPL+EVTHKRR+SALGPGGL+RER
Sbjct: 444  DNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEVTHKRRVSALGPGGLSRER 503

Query: 543  AGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVNG--VVT 600
            AGFEVRDVH THYGRLC IETPEGPNIGLI+SL   AR N  GF+ETPYR+V+ G  VV 
Sbjct: 504  AGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHARVNHMGFIETPYRKVIEGKVVVD 563

Query: 601  DEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDVATNQV 660
              V+YL+A EE    IAQANA + E+G F +  V  R +G+  +       YMDVA NQ+
Sbjct: 564  GSVEYLTAEEEDTHHIAQANAIIDEDGNFINPTVKGRFEGDFPVEAPNTYTYMDVAPNQI 623

Query: 661  VSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAKR 720
            VS+AASLIPFLEHDDANRALMG+NMQRQAVP L+ + P+VGTG+E   A+DS    +A+ 
Sbjct: 624  VSVAASLIPFLEHDDANRALMGSNMQRQAVPLLKPQAPIVGTGLEGRAAIDSRALVIAEG 683

Query: 721  GGVIQSVDASRIVVK---VNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPV 777
             GVI  VDA++IVVK    +EE+L+  +A    YNL K+ R+NQ+TCIN  P V  GE V
Sbjct: 684  EGVIDFVDANKIVVKYDLTHEEKLVSFDAEYVTYNLIKFRRTNQDTCINLTPLVKKGERV 743

Query: 778  ARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELS 837
             +G  L +G +T+ GELALG+N+++AFMPW GYNFED+I++SE+VV+DD FT+IHI+E  
Sbjct: 744  TKGQPLCEGYATNNGELALGRNLQVAFMPWQGYNFEDAIVISEKVVRDDVFTSIHIEEFE 803

Query: 838  CVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTP 897
               R+TK G EE+T++IPNV E A+  LDE+GI+ IGAEV+ GDIL+GK+TPKGET  TP
Sbjct: 804  LEVRETKRGEEELTSEIPNVSEEAVRNLDENGIIRIGAEVREGDILIGKITPKGETDPTP 863

Query: 898  EEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRA---LEIEQMQLK 954
            EEKLLRAIFG+KA DVKD SL+ P S+ G VID ++F+R   +K+ RA    E+E++++K
Sbjct: 864  EEKLLRAIFGDKAGDVKDASLKAPPSLNGVVIDTKLFSRPKKDKNLRAKSKKEVEELKVK 923

Query: 955  EAKK-------DLTEEFQILEG----GLLARVRSVLLAGGYTEAKLGSIE---------- 993
             +K+        + +  ++LEG    G+  +    +L  G   ++   I+          
Sbjct: 924  YSKELTAIKNVMVDKLVELLEGKTSQGIRHKFGDEILTKGSKFSRKNIIDALFPEKNPYK 983

Query: 994  --------------RKKWLEQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQG 1039
                          +   LE    ++   + L +L + Y++ +      F+ +R  +  G
Sbjct: 984  DESNYAVPEEVNMFKDLILENWTTDDSTNSMLVELVKNYNKRRNIVSAHFKRERFTLEVG 1043

Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLN 1099
            D+L  G++++ KVY+A KR+++ GDKMAGRHGNKGV+++I   EDMP+ E+G P+DIVLN
Sbjct: 1044 DELPAGIVQLAKVYIAKKRKLKVGDKMAGRHGNKGVVARIVREEDMPFLEDGTPMDIVLN 1103

Query: 1100 PLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELAKLREFLQKVYDLGDTRQRVD 1159
            PLGVPSRMNIGQI E  LG A   +G                                  
Sbjct: 1104 PLGVPSRMNIGQIYETVLGWAGLRLG---------------------------------- 1129

Query: 1160 ISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDA 1219
                     RT A          TP+FDGA E  + A L  A LP  G+  LFDG +GD 
Sbjct: 1130 ---------RTYA----------TPIFDGATEEQVSAELAEAGLPHFGRSYLFDGLSGDR 1170

Query: 1220 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1279
            F++PVTVG +YMLKL HLVDDKMHARS G YSL+TQQPLGGKAQFGGQRFGEMEVWALEA
Sbjct: 1171 FDQPVTVGVIYMLKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEA 1230

Query: 1280 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELE 1339
            +GA+  LQE+LTVKSDDV GR K Y++IV G+   +P +PESFNVL+ E+R L + I LE
Sbjct: 1231 FGASNVLQEILTVKSDDVIGRAKAYESIVKGDVLPKPNIPESFNVLIHELRGLALEITLE 1290