Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1391 a.a., DNA-directed RNA polymerase subunit beta from Magnetospirillum magneticum AMB-1

 Score = 1563 bits (4046), Expect = 0.0
 Identities = 801/1387 (57%), Positives = 1033/1387 (74%), Gaps = 50/1387 (3%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD--PE--GQYGLEAAFRSV 56
            M  SYT +KR+RK FG  P V  +P L+ +Q  S++ F++ D  PE  G  GL+  F+SV
Sbjct: 1    MAKSYTGRKRVRKSFGRIPTVAPMPNLIEVQKSSYDHFLQMDTAPEQRGNVGLQEVFKSV 60

Query: 57   FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGT--V 114
            FPI+ ++    L++V Y L +P +DV+ECQ RG+T++ PL+V LRLV++D D   G+  +
Sbjct: 61   FPIKDFSERGTLEFVRYELEQPKYDVEECQQRGMTFAAPLKVTLRLVVWDIDEDTGSRSI 120

Query: 115  KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174
            +DIKEQ+VYMG++PLMT NGTFVINGTERVIVSQ+HRSPGVFFD DKGKTHSSGK L+ A
Sbjct: 121  RDIKEQDVYMGDMPLMTSNGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAA 180

Query: 175  RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRAL--------------------- 213
            R+IPYRGSWLDFEFD KD +YVRIDRRRKLP + +L AL                     
Sbjct: 181  RVIPYRGSWLDFEFDAKDLVYVRIDRRRKLPVTTLLYALDGMNTAALRAQRAAEGRGLEQ 240

Query: 214  ----GKTSAEILDIFFEKVNFEVKDQTLMMELVPERLRGETATFDI--EADGKVYVEKGR 267
                G TS EIL  F+ KV +    +        ERL+G     D+     G+   + G 
Sbjct: 241  SEIKGMTSEEILSYFYGKVVYTRGPKGWKTPFDAERLKGVKLVSDLIDAKSGEKVADAGS 300

Query: 268  RVTARHIRQLEKDGVNFIEVPVEYIVGKVSAKDYVNEATGELIITANQEISLEALANLSQ 327
            ++T R  ++L + G+  I V  E ++G+  A+D +NE TGE+   A  E++   +A L +
Sbjct: 301  KMTPRLGKKLREAGLTDIVVFPEDMIGQYVAEDIINEQTGEIFTEAGDELTANLVAELEK 360

Query: 328  AGYKKLEVLFTNDLDHGPFMSETLRVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFES 387
            AG  +L VL  + ++ GP+M  TL +D  + R  AL++IYR+MRPGEPPT E AE+LF  
Sbjct: 361  AGISELPVLAIDHINVGPYMRNTLAIDKNSSREEALIDIYRVMRPGEPPTLETAEALFTG 420

Query: 388  LFFSAERYDLSTVGRMKFNSSIGR-EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDID 446
            LFF +ERYDLS VGR+K NS +   E A+    L + DI+ V+K L+ +++GKGE+DDID
Sbjct: 421  LFFDSERYDLSAVGRVKMNSRLNTPEVADTVRVLRKEDILGVIKVLVELKDGKGEIDDID 480

Query: 447  HLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFF 506
            HLGNRR+RSVGE+ ENQ+RVGL+R+ERA++ER+S  D+D+VMP DLINAKP +AAV+EFF
Sbjct: 481  HLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDIDSVMPHDLINAKPAAAAVREFF 540

Query: 507  GSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEG 566
            GSSQLSQFMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEG
Sbjct: 541  GSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEG 600

Query: 567  PNIGLINSLSAFARCNEYGFLETPYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEE 626
            PNIGLINSL+ +AR N+YGF+E PYR+V +G VT +V YLSA+EEG++ +AQAN+ L  +
Sbjct: 601  PNIGLINSLATYARVNQYGFIEAPYRKVFDGRVTSDVVYLSAMEEGRYTVAQANSILDAD 660

Query: 627  GGFADELVTARQKGESGLHPREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQ 686
            G F ++LV+ R+ G+  + P   ++ +DV+  Q+VS+AA+LIPFLE+DDANRALMG+NMQ
Sbjct: 661  GRFTEDLVSCRRAGDFVMVPPNEINMIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQ 720

Query: 687  RQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEA 746
            RQAVP +R+E PLVGTG+E+ VA DSG    AKR GV+  VDA+R+V++  EE      +
Sbjct: 721  RQAVPLIRAEAPLVGTGMEQAVARDSGAAITAKRTGVVDQVDATRVVIRATEETQ-ASAS 779

Query: 747  GIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARGDVLADGPSTDLGELALGQNMRIAFMP 806
            G+DIYNL K+ RSNQNTCI QRP V  G+ + +GD++ADGPST LGELALG+N+ +AFMP
Sbjct: 780  GVDIYNLLKFQRSNQNTCITQRPLVKVGDLIQKGDIIADGPSTQLGELALGRNVLVAFMP 839

Query: 807  WNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLD 866
            WNGYNFEDSIL+SER+V+DD FT+IHI+E   +ARDTKLG EEIT DIPNVGE AL  LD
Sbjct: 840  WNGYNFEDSILISERIVRDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNLD 899

Query: 867  ESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAG 926
            E+GIVYIGAEVK GDILVGKVTPKGE+ +TPEEKLLRAIFGEKASDV+DTSLR+P  V+G
Sbjct: 900  EAGIVYIGAEVKPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSG 959

Query: 927  TVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDLTEEFQILEGGLLARVRSVLL------ 980
            T+++V+VF+R GVEKD+RAL IE+ +++   KD  +E  ILE    AR++++++      
Sbjct: 960  TIVEVRVFSRRGVEKDERALAIERAEIERLAKDRDDERHILERSFFARLKALIIGKKVVS 1019

Query: 981  ------AGG-YTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYDELKADFDKKFEAKR 1033
                  AG    +A +  +    W    ++++ +    E L   +D+      ++FE K 
Sbjct: 1020 GPKGIKAGTVLADANMDELHPSTWRNIAIDDDAVMADAEALKRAFDQQVDKLQERFENKV 1079

Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQP 1093
             K+ +GD+L PGV+K+VKV++AVKR++QPGDKMAGRHGNKGVIS+I P+EDMPY E+GQ 
Sbjct: 1080 EKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRIVPLEDMPYLEDGQQ 1139

Query: 1094 VDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMI-KEQQELAKLREFLQKVYDL- 1151
            VDIVLNPLGVPSRMN+GQILE HLG A  G+G +I  M+ K ++  A + +   K+ D+ 
Sbjct: 1140 VDIVLNPLGVPSRMNVGQILETHLGWACAGLGQQIGGMLDKYKRNAATIIDLKSKLKDVY 1199

Query: 1152 GDTRQRVDISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLELADLPASGQLTL 1211
            GD     +I+ L+D ++  LAHNL  G+P+ATPVFDGA ES I AML  A   +SGQ+TL
Sbjct: 1200 GDAIYEDEIAGLADNEITELAHNLTPGVPIATPVFDGARESDIVAMLTKAGRSSSGQVTL 1259

Query: 1212 FDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGE 1271
             DGRTG+ F+R VTVGY+YMLKL+HLVDDK+HARS G YSLVTQQPLGGKAQFGGQRFGE
Sbjct: 1260 VDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGE 1319

Query: 1272 MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRS 1331
            MEVWALEAYGAAYTLQEMLTVKSDDV+GRTK+Y+ IV G+   E G+PESFNVL+KE+RS
Sbjct: 1320 MEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDTFEAGIPESFNVLVKELRS 1379

Query: 1332 LGINIEL 1338
            LG+N+EL
Sbjct: 1380 LGLNVEL 1386