Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1342 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 2287 bits (5926), Expect = 0.0
 Identities = 1140/1342 (84%), Positives = 1242/1342 (92%), Gaps = 1/1342 (0%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQ 60
            MVYSYTEKKRIRKDFG RPQVLD+PYLLSIQLDSF+KFIEQDPEGQYGLEAAFRSVFPIQ
Sbjct: 1    MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60

Query: 61   SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ 120
            SY+GNSELQYVSYRLGEPVFDV+ECQIRGVTYS PLRVKLRLVI++++AP GTVKDIKEQ
Sbjct: 61   SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120

Query: 121  EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180
            EVYMGEIPLMT+NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
Sbjct: 121  EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180

Query: 181  GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQTLMME 240
            GSWLDFEFDPKDNL+VRIDRRRKLPA+IILRAL  T+ +ILD+FFEKV FE++D  L ME
Sbjct: 181  GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME 240

Query: 241  LVPERLRGETATFDIEADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGKVSAKD 300
            L+PERLRGETA+FDIEA+GKVYVEKGRR+TARHIRQLEKD +  IEVPVEYI GKV +KD
Sbjct: 241  LIPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVVSKD 300

Query: 301  YVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDSTTDRI 360
            YV+E+TGELI  AN E+SL+ LA LSQ+G+K++E LFTNDLDHGP++SET+RVD T DR+
Sbjct: 301  YVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRL 360

Query: 361  SALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAEEQGTL 420
            SALVEIYRMMRPGEPPT+EAAESLFE+LFFS +RYDLS VGRMKFN S+ R++ E  G L
Sbjct: 361  SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL 420

Query: 421  DEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480
             + DII+VMKKLI IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
Sbjct: 421  SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480

Query: 481  LGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR 540
            LGDLD +MPQD+INAKPISAAVKEFFGSSQLSQFMDQNNPLSE+THKRRISALGPGGLTR
Sbjct: 481  LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540

Query: 541  ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVNGVVT 600
            ERAGFEVRDVH THYGR+CPIETPEGPNIGLINSLS +A+ NEYGFLETPYRRVV+GVVT
Sbjct: 541  ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVT 600

Query: 601  DEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDVATNQV 660
            DE+ YLSAIEEG +VIAQAN+ L +EG F ++LVT R KGES L  R+ VDYMDV+T QV
Sbjct: 601  DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660

Query: 661  VSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAKR 720
            VS+ ASLIPFLEHDDANRALMGANMQRQAVPTLR++KPLVGTG+ER VAVDSGVTAVAKR
Sbjct: 661  VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720

Query: 721  GGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARG 780
            GG +Q VDASRIV+KVNE+E+ PGEAGIDIYNLTKYTRSNQNTCINQ PCV  GEPV RG
Sbjct: 721  GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780

Query: 781  DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVA 840
            DVLADGPSTDLGELALGQNMR+AFMPWNGYNFEDSILVSERVVQ+DRFTTIHIQEL+CV+
Sbjct: 781  DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840

Query: 841  RDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK 900
            RDTKLG EEITADIPNVGEAALSKLDESGIVYIGAEV GGDILVGKVTPKGETQLTPEEK
Sbjct: 841  RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900

Query: 901  LLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL 960
            LLRAIFGEKASDVKD+SLRVPN V+GTVIDVQVFTRDGVEKDKRALEIE+MQLK+AKKDL
Sbjct: 901  LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960

Query: 961  TEEFQILEGGLLARVRSVLLAGGYTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYDE 1020
            +EE QILE GL +R+R+VL++ G    KL  + R +WLE  L +EE QNQLEQLAEQYDE
Sbjct: 961  SEELQILEAGLFSRIRAVLVSSGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020

Query: 1021 LKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080
            LK +F+KK EAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
Sbjct: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080

Query: 1081 PVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELAK 1140
            P+EDMPYDENG PVDIVLNPLGVPSRMNIGQILE HLG+AAKGIGDKIN M+K+QQE+AK
Sbjct: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140

Query: 1141 LREFLQKVYDLG-DTRQRVDISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLE 1199
            LREF+Q+ YDLG D RQ+VD+S  SD++V  LA NLR G+P+ATPVFDGA E+ IK +L+
Sbjct: 1141 LREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200

Query: 1200 LADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1259
            L DLP SGQ+TLFDGRTG+ FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
Sbjct: 1201 LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260

Query: 1260 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMP 1319
            GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH MEPGMP
Sbjct: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP 1320

Query: 1320 ESFNVLLKEIRSLGINIELEDE 1341
            ESFNVLLKEIRSLGINIELEDE
Sbjct: 1321 ESFNVLLKEIRSLGINIELEDE 1342