Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1355 a.a., DNA-directed RNA polymerase, beta subunit from Kangiella aquimarina DSM 16071

 Score = 1970 bits (5103), Expect = 0.0
 Identities = 989/1355 (72%), Positives = 1143/1355 (84%), Gaps = 15/1355 (1%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQ 60
            M YSYTEKKRIRKDFG R  +LD+PYLL+IQ DS+ +F+E   +   GL++AFRS+FPI+
Sbjct: 1    MAYSYTEKKRIRKDFGRRSNILDVPYLLAIQKDSYREFLEPRGDEDSGLDSAFRSIFPIE 60

Query: 61   SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ 120
            SY+GN+ L+YV Y LGEPVF+VKECQIRG+TY+ PLRVK+RLVI+DKD+    VKDI+EQ
Sbjct: 61   SYSGNAALEYVGYSLGEPVFNVKECQIRGITYAAPLRVKIRLVIYDKDSKTKKVKDIREQ 120

Query: 121  EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180
            EV+MGE+PLMTENGTFVINGTERVIVSQLHRSPGVFFDSD+GKTHSSGK+LY AR+IPYR
Sbjct: 121  EVFMGELPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDRGKTHSSGKLLYQARVIPYR 180

Query: 181  GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEV-KDQTLMM 239
            GSWLDFEFDPKD LYVRIDRRRKLPASIILR+LG  + ++LD+FFE+ NF + K   + +
Sbjct: 181  GSWLDFEFDPKDMLYVRIDRRRKLPASIILRSLGYNTQDMLDMFFERNNFYITKKGEVQL 240

Query: 240  ELVPERLRGETATFDIEADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGKVSAK 299
            EL+P RLRGETATF+I+A GKV VE+GRR+T RHI QLEK GV  ++VP EYI G+  A 
Sbjct: 241  ELIPSRLRGETATFEIKAKGKVVVEEGRRITPRHIAQLEKAGVKKLDVPTEYIYGRALAT 300

Query: 300  DYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDSTTDR 359
            D +++ +GE+I  AN EI+ E L  + +AG  ++  L+TNDLDHGP+MS+TLR+DST   
Sbjct: 301  DIIDKESGEIIAEANAEITEEILEKMIEAGVTEVPTLYTNDLDHGPYMSDTLRIDSTRTP 360

Query: 360  ISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAEEQGT 419
            + A VEIYRMMRPGEPPT++AAE+LFE+LFF+ ERYDLS VGRMKFN  +GR++ E +GT
Sbjct: 361  LEAKVEIYRMMRPGEPPTQDAAEALFENLFFNLERYDLSRVGRMKFNRRVGRDEIEGEGT 420

Query: 420  LDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479
            L   DII+V+K LI IRNG G VDDIDHLGNRRIR VGEMAENQFRVGLVRVERAVKERL
Sbjct: 421  LSNDDIIDVIKTLIDIRNGNGTVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAVKERL 480

Query: 480  SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT 539
            S  + +N+MPQDLINAKP+SAAVKEFFGSSQLSQFMDQNNPLSE+THKRR+SALGPGGLT
Sbjct: 481  SQAESENLMPQDLINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLT 540

Query: 540  RERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVNGVV 599
            RERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ +AR N+YGFLETPYRRV +G  
Sbjct: 541  RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLACYARTNQYGFLETPYRRVADGKP 600

Query: 600  TDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDVATNQ 659
            T EVDYLSAI+EG+FVIAQANA L + G F+D+LV +R +GE  L   E V YMDV+  Q
Sbjct: 601  TAEVDYLSAIDEGKFVIAQANANLDKNGAFSDDLVPSRFQGEFMLATPEQVQYMDVSPQQ 660

Query: 660  VVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAK 719
            +VS+AAS+IPFLEHDDANRALMG+NMQRQAVPTLR+EKPLVGTG+ER VAVDSGV   AK
Sbjct: 661  IVSVAASMIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERTVAVDSGVVVAAK 720

Query: 720  RGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVAR 779
            RGGV+  VDASR+V++VNE+E+   ++G+DIYN TKYTRSNQNTCINQRP V  G+ VAR
Sbjct: 721  RGGVVDQVDASRVVIRVNEDEVGDNDSGVDIYNFTKYTRSNQNTCINQRPIVKQGDIVAR 780

Query: 780  GDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCV 839
            GDVLADGPSTDLGELALGQNMR+AFMPWNGYNFEDSIL+SE+VVQ+DRFT+IHIQEL+C+
Sbjct: 781  GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILISEKVVQEDRFTSIHIQELTCI 840

Query: 840  ARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE 899
            +RDTKLG EEITADIPNVGE+ALSKLDESGIVYIGAEVK GDILVGKVTPKGETQLTPEE
Sbjct: 841  SRDTKLGPEEITADIPNVGESALSKLDESGIVYIGAEVKPGDILVGKVTPKGETQLTPEE 900

Query: 900  KLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKD 959
            KLLRAIFGEKASDVKDTSLRV  S  GTVIDVQVFTRDGVEKD RA EIE  ++  AKKD
Sbjct: 901  KLLRAIFGEKASDVKDTSLRVGTSTHGTVIDVQVFTRDGVEKDARAKEIENAEVARAKKD 960

Query: 960  LTEEFQILEGGLLARVRSVLL-------------AGGYTEAKLGSIERKKWLEQTLENEE 1006
            L +EF+IL   +  R R++++                 T   L S+E  ++LE  L  EE
Sbjct: 961  LNDEFRILAESIYQRARNLVMGCVGEKGPNKFKKGSKITADYLDSLEPAQYLEIQLRVEE 1020

Query: 1007 LQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066
             Q  LE LA    E + ++DKKFE ++ KITQGDDLAPGV KIVKVYLAVKRRIQPGDKM
Sbjct: 1021 KQQALESLANYLAEQRKEYDKKFEVQKLKITQGDDLAPGVQKIVKVYLAVKRRIQPGDKM 1080

Query: 1067 AGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGD 1126
            AGRHGNKGVIS I P+EDMPYDENG+PVDIVLNPLGVPSRMNIGQILE HLG AAKG+G 
Sbjct: 1081 AGRHGNKGVISTIVPIEDMPYDENGEPVDIVLNPLGVPSRMNIGQILETHLGWAAKGVGI 1140

Query: 1127 KINQMIKEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAGLPVATPVF 1186
            KI +++   +    +R FL KVY+  D +  VD+SE++D++V  +A NLRAG+P+ATPVF
Sbjct: 1141 KIGELLDTGKAPKTVRTFLNKVYNHRDEKP-VDLSEMTDDEVMAMAENLRAGVPMATPVF 1199

Query: 1187 DGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARS 1246
            DGA E  I AM ELA+LP +GQ  L+DGRTGD FERPVTVGYMYMLKLNHL+DDKMHARS
Sbjct: 1200 DGATEEDIHAMYELAELPKTGQSWLYDGRTGDRFERPVTVGYMYMLKLNHLIDDKMHARS 1259

Query: 1247 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1306
            TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT+MYKN
Sbjct: 1260 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTRMYKN 1319

Query: 1307 IVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341
            IVDG+H MEPGMPESFNVL KEIRSL INIELE E
Sbjct: 1320 IVDGDHRMEPGMPESFNVLTKEIRSLAINIELEHE 1354