Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1184 a.a., DNA-directed RNA polymerase subunit beta from Fusobacterium nucleatum SB010

 Score =  798 bits (2061), Expect = 0.0
 Identities = 446/964 (46%), Positives = 612/964 (63%), Gaps = 71/964 (7%)

Query: 12  RKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSVFPIQSYNGNSE 67
           R DFG       +P+ L  QL+S+E F++ +       + G E AFR VFPI+S NG+  
Sbjct: 7   RLDFGKIKSRGKMPHFLEFQLNSYEDFLQTNMSPNKREEKGFELAFREVFPIESSNGDVR 66

Query: 68  LQYVSYRLGE---PVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQEVYM 124
           L+Y+ Y L E   P+ D  EC+ RG TYS  L+V+LRL+    +   G   +I+E  VY 
Sbjct: 67  LEYIGYELHEAEAPLNDELECKKRGKTYSNSLKVRLRLI----NKKMGN--EIQESLVYF 120

Query: 125 GEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184
           GE+P MTE  TF+ING ERV+VSQLHRSPGV F  +      +GK L++ +IIPY+G+WL
Sbjct: 121 GEVPKMTERATFIINGAERVVVSQLHRSPGVSFSKEVNT--QTGKDLFSGKIIPYKGTWL 178

Query: 185 DFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQTLMMELVPE 244
           +FE D  D L V+IDR++K+ A+I L+A+           F K N E++D  L       
Sbjct: 179 EFETDKNDFLSVKIDRKKKVLATIFLKAVD----------FFKDNNEIRDYFL------- 221

Query: 245 RLRGETATFDIEADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGKVSAKDYVNE 304
               ET   +++A  K Y                K+    + +  + + G +  +D ++E
Sbjct: 222 ----ETKELNLKALYKKY---------------SKEPEELLNILKQELEGSIVKEDILDE 262

Query: 305 ATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDSTTDRISALV 364
            TGE I      I+ E + NL +   + +             ++ TL  D+T     A+V
Sbjct: 263 ETGEFIAETEAFINEELINNLIENKVESISYWHVGP--ESKLIANTLMNDTTLTEDEAVV 320

Query: 365 EIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAEEQGTLDEVD 424
           E+++ +RPG+  T ++A SL   +FF+ +RYDL  VGR K N  +  +  EEQ +L + D
Sbjct: 321 EVFKKLRPGDQVTVDSARSLIRQMFFNPQRYDLEPVGRYKMNKRLKLDVPEEQISLTKED 380

Query: 425 IIEVMKKLISIRNGKGEV--DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482
           ++  +K +I + NG   V  DDID+L NRRIR VGE+   Q + GL ++ + V+E+++  
Sbjct: 381 VLGTIKYVIDLNNGDQNVHTDDIDNLSNRRIRGVGELLLMQIKTGLAKMNKMVREKMTTQ 440

Query: 483 DLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRER 542
           D++ V PQ L+N +P++A +++FFGS QLSQFMDQ+NPL+E+THKRRISALGPGGL+RER
Sbjct: 441 DIETVTPQSLLNTRPLNALIQDFFGSGQLSQFMDQSNPLAELTHKRRISALGPGGLSRER 500

Query: 543 AGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVNGV-VTD 601
           AGFEVRDVH +HYGR+CPIETPEGPNIGLI SL+ +A+ N+YGF+ETPY +V NGV + D
Sbjct: 501 AGFEVRDVHDSHYGRICPIETPEGPNIGLIGSLATYAKINKYGFIETPYVKVENGVAIVD 560

Query: 602 EVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDVATNQVV 661
           +V YL+A EE    IAQA+ KL ++      LV  R   E      E V+YMDV+  QVV
Sbjct: 561 DVHYLAADEEDGLFIAQADTKL-DKNNKLQGLVVCRYGHEIVEIEPERVNYMDVSPKQVV 619

Query: 662 SIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAKRG 721
           S++A LIPFLEHDDANRALMG+NMQRQAVP LRSE P +GTG+ER VAVDSG     K  
Sbjct: 620 SVSAGLIPFLEHDDANRALMGSNMQRQAVPLLRSEAPFIGTGLERKVAVDSGAVVTTKVS 679

Query: 722 GVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARGD 781
           G +  VD  +I+++  +++          Y L  Y RSNQ+ C++Q P V  G+ V  GD
Sbjct: 680 GKVTYVDGKKIIIEDADKKE-------HTYRLLNYERSNQSMCLHQTPLVDLGDKVKAGD 732

Query: 782 VLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVAR 841
           ++ADGP+T LG+LALG+N+ + FMPW GYN+ED+IL+S+R+ +DD FT+IHI+E    AR
Sbjct: 733 IIADGPATRLGDLALGRNILMGFMPWEGYNYEDAILISDRLRKDDVFTSIHIEEYEIDAR 792

Query: 842 DTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKL 901
            TKLG EEIT +IPNV E+AL  LDE+GI+ IG+EV  GDILVGK  PKGET+   EEKL
Sbjct: 793 TTKLGDEEITREIPNVSESALRNLDENGIIMIGSEVGPGDILVGKTAPKGETEPPAEEKL 852

Query: 902 LRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRD-------GVEKDKRALEIEQMQLK 954
           LRAIFGEKA DV+DTSL +P+   G V+DV   +R+       GV K  R L  E+ ++ 
Sbjct: 853 LRAIFGEKARDVRDTSLTMPHGSKGVVVDVLELSRENGDELKAGVNKSIRVLVAEKRKIT 912

Query: 955 EAKK 958
              K
Sbjct: 913 VGDK 916



 Score =  286 bits (731), Expect = 1e-80
 Identities = 185/488 (37%), Positives = 258/488 (52%), Gaps = 73/488 (14%)

Query: 865  LDESGIVYIGAEVKGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNS 923
            L ++ +V +G +VK GDI+  G  T  G+  L     +L      +  + +D  L     
Sbjct: 716  LHQTPLVDLGDKVKAGDIIADGPATRLGDLALG--RNILMGFMPWEGYNYEDAIL----- 768

Query: 924  VAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDLTEEFQILEGGLLARV--RSVLLA 981
            ++  +    VFT   +E+     EI+    K   +++T E   +    L  +    +++ 
Sbjct: 769  ISDRLRKDDVFTSIHIEE----YEIDARTTKLGDEEITREIPNVSESALRNLDENGIIMI 824

Query: 982  G---GYTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQ 1038
            G   G  +  +G    K   E   E + L+    + A    +         +     + +
Sbjct: 825  GSEVGPGDILVGKTAPKGETEPPAEEKLLRAIFGEKARDVRDTSLTMPHGSKGVVVDVLE 884

Query: 1039 -----GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQP 1093
                 GD+L  GV K ++V +A KR+I  GDKM+GRHGNKGV+S++ P EDMP+  +G  
Sbjct: 885  LSRENGDELKAGVNKSIRVLVAEKRKITVGDKMSGRHGNKGVVSRVLPAEDMPFLADGTH 944

Query: 1094 VDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELAKLREFLQKVYDLGD 1153
            +D+VLNPLGVPS                                                
Sbjct: 945  LDVVLNPLGVPS------------------------------------------------ 956

Query: 1154 TRQRVDISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFD 1213
               R++I ++ +  +      L  G  ++TPVFDGA E  IK  LE    P +G++TL+D
Sbjct: 957  ---RMNIGQVLEVHLGMAMRTLNGGTYISTPVFDGATEEQIKDYLEKQGFPRTGKVTLYD 1013

Query: 1214 GRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1273
            GRTG+ F+  VTVG MYMLKL+HLV+DKMHAR+ G YSLVTQQPLGGKAQFGGQR GEME
Sbjct: 1014 GRTGEKFDNEVTVGIMYMLKLHHLVEDKMHARAIGPYSLVTQQPLGGKAQFGGQRLGEME 1073

Query: 1274 VWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLG 1333
            VWALEAYGA+  LQEMLTVKSDD+ GRTK Y+ I+ G    E  +PESF VLLKE ++L 
Sbjct: 1074 VWALEAYGASNILQEMLTVKSDDITGRTKTYEAIIKGEAMPESDLPESFKVLLKEFQALA 1133

Query: 1334 INIELEDE 1341
            ++IEL DE
Sbjct: 1134 LDIELCDE 1141