Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1371 a.a., DNA-directed RNA polymerase subunit beta from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 1547 bits (4006), Expect = 0.0
 Identities = 793/1359 (58%), Positives = 1027/1359 (75%), Gaps = 33/1359 (2%)

Query: 4    SYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEG----QYGLEAAFRSVFPI 59
            S+T KKRIRK FG  P+ + +P L+ +Q  S+E+F++++       + G+EA F+SVFPI
Sbjct: 19   SFTGKKRIRKSFGRIPEAIAMPNLIEVQRASYEQFLQREVRPGVRKEQGIEAVFKSVFPI 78

Query: 60   QSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TVKDI 117
            + +N  + L+YVSY   EP +DV+EC  R +TY+ PL+VKLRL++F+ D   G  +VKDI
Sbjct: 79   KDFNERAILEYVSYEFEEPKYDVEECIQRDMTYAAPLKVKLRLIVFETDEETGARSVKDI 138

Query: 118  KEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177
            KEQ+VYMG+IPLMT+ GTF++NGTERVIVSQ+HRSPGVFFD DKGKTHSSGK+L+ AR+I
Sbjct: 139  KEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVI 198

Query: 178  PYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQTL 237
            PYRGSWLDFEFD KD +YVRIDRRRKLPA+  L  LG    EIL  F+E V +E + +  
Sbjct: 199  PYRGSWLDFEFDAKDVVYVRIDRRRKLPATTFLMGLGMDGEEILKTFYETVPYEKRGEGW 258

Query: 238  MMELVPERLRGETATFD-IEAD-GKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGK 295
            +     ER RG    FD I+AD G+V  + G++++AR  ++L +   + + +  + +V K
Sbjct: 259  VTPYKAERWRGVKPEFDLIDADTGEVVAQAGQKISARAAKKLGETTTS-LSLAADALVTK 317

Query: 296  VSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDH---GPFMSETLR 352
              A D VN  TGE+   A  E+    +  L Q G+  +EVL   D+DH   G +M  TLR
Sbjct: 318  YLANDAVNFETGEIFAEAGDELDAPTIEVLEQNGFTTIEVL---DIDHVTVGAYMRNTLR 374

Query: 353  VDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSI-GR 411
            VD   +R  AL ++YR+MRPGEPPT EAAE++F SLFF +ERYDLS VGR+K N  +   
Sbjct: 375  VDKNDNREDALFDVYRVMRPGEPPTPEAAEAMFNSLFFDSERYDLSAVGRVKMNMRLESP 434

Query: 412  EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471
            E ++E   L + D+++V++ L+ +++G+GE+DDID+LGNRR+RSVGE+ ENQ+RVGL+R+
Sbjct: 435  EVSDEIRVLRKEDVLKVLQILVGLKDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRM 494

Query: 472  ERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRIS 531
            ERA+KER+S  D+D VMP DLINAKP +AAV+EFFGSSQLSQFMDQ NPLSE+THKRR+S
Sbjct: 495  ERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS 554

Query: 532  ALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPY 591
            ALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+  AR N+YGF+E+PY
Sbjct: 555  ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIESPY 614

Query: 592  RRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVD 651
            RRV +G    EV Y+SA+EE ++ IAQAN +L + G   ++LV  R  GES L  ++ VD
Sbjct: 615  RRVKDGQAQGEVVYISAMEESKYTIAQANIEL-KNGQIVEDLVPGRINGESQLLNKDAVD 673

Query: 652  YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVD 711
             MDV+  QVVS+AA+LIPFLE+DDANRALMGANMQRQAVP ++S+ PLVGTG+E  VAVD
Sbjct: 674  MMDVSPKQVVSVAAALIPFLENDDANRALMGANMQRQAVPLVQSDAPLVGTGMEAVVAVD 733

Query: 712  SGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCV 771
            SG   VA+R GV++ +D +RIVV+   + +    +G+DIY L+K+ RSNQ+TCINQRP V
Sbjct: 734  SGAVVVARRDGVVEQIDGTRIVVRATGD-VDAARSGVDIYRLSKFQRSNQSTCINQRPIV 792

Query: 772  MPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 831
              G+ V  GDV+ADGPSTDLGELALG+N  +AFMPWNGYNFEDSIL+SER+V+DD FT+I
Sbjct: 793  RVGDQVKGGDVIADGPSTDLGELALGRNALVAFMPWNGYNFEDSILISERIVRDDVFTSI 852

Query: 832  HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKG 891
            H++E    ARDTKLG EEIT DIPNVGE AL  LDE+GIV IGAEV+ GDILVGKVTPKG
Sbjct: 853  HLEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTPKG 912

Query: 892  ETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQM 951
            E+ +TPEEKLLRAIFGEKASDV+DTSLR+P  VAGT++DV+VF R GV+KD+RA+ IE+ 
Sbjct: 913  ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERAMAIERA 972

Query: 952  QLKEAKKDLTEEFQILEGGLLARVRSVLLA------------GGYTEAKLGSIERKKWLE 999
            +++   KD  +E +ILE  +  R++ +++             G  T+ KL  + R  W +
Sbjct: 973  EIERLGKDRDDELKILERNVYGRLKPLIVGKNAVSGPKGIGRGELTDEKLAEVSRGLWWQ 1032

Query: 1000 QTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059
              L++E+   +LE +  Q+++ +   D++FE K  K+ +GD+L PGV+K+VKV++AVKR+
Sbjct: 1033 IALDDEKAMGELEAMKRQFEDARKQLDRRFEDKVEKLQRGDELPPGVMKMVKVFVAVKRK 1092

Query: 1060 IQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGL 1119
            +QPGDKMAGRHGNKGVISKI P+EDMP+ E+G  VD+VLNPLGVPSRMNIGQI E HLG 
Sbjct: 1093 LQPGDKMAGRHGNKGVISKILPIEDMPHLEDGTHVDVVLNPLGVPSRMNIGQIFETHLGW 1152

Query: 1120 AAKGIGDKINQMIKEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAGL 1179
            AA G+G +I+ +++  Q   + +  + ++  +      +   E   E++  LA NL  G+
Sbjct: 1153 AAAGLGKQISGLLEAWQAGGQKQALIDRLTHIYGEETPLPQDE---EELIELAKNLSKGV 1209

Query: 1180 PVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVD 1239
            P ATPVFDGA    I+ +LE A L  S Q  L+DG+TG+ F+RPVTVGY+YMLKL+HLVD
Sbjct: 1210 PFATPVFDGAHIGDIERLLEEAGLNKSAQSILYDGQTGEQFKRPVTVGYIYMLKLHHLVD 1269

Query: 1240 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1299
            DK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV G
Sbjct: 1270 DKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAG 1329

Query: 1300 RTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIEL 1338
            RTK+Y+ IV G+ + E G+PESFNVL+KE+RSLG+N+EL
Sbjct: 1330 RTKVYEAIVRGDDSFEAGIPESFNVLIKEMRSLGLNVEL 1368