Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1397 a.a., DNA-directed RNA polymerase subunit beta from Azospirillum sp. SherDot2

 Score = 1550 bits (4013), Expect = 0.0
 Identities = 791/1395 (56%), Positives = 1029/1395 (73%), Gaps = 60/1395 (4%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD--PE--GQYGLEAAFRSV 56
            M  S+T +KR+RK FG  P+V  +P L+ +Q  S++ F++ D  PE     GL+  F+SV
Sbjct: 1    MAKSFTGRKRVRKSFGRIPEVTQMPNLIEVQRSSYDHFLQMDVAPEKRANLGLQEVFKSV 60

Query: 57   FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114
            FPI+ ++  + L +V Y L +P +DV+ECQ RG+T++ PL+V LRL +FD +   G  ++
Sbjct: 61   FPIKDFSDRAVLDFVKYELEQPKYDVEECQQRGMTFAAPLKVTLRLSVFDVEEDTGLRSI 120

Query: 115  KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174
            +DIKEQ+VYMG++PLMT NGTFVINGTERVIVSQ+HRSPGVFFD DKGKTH+SGK L+ A
Sbjct: 121  RDIKEQDVYMGDMPLMTANGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHASGKYLFAA 180

Query: 175  RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRAL--------------------- 213
            R+IPYRGSWLDFEFD KD +YVRIDRRRKLPA+ +L AL                     
Sbjct: 181  RVIPYRGSWLDFEFDAKDLVYVRIDRRRKLPATTLLFALDGAETEALRAERKANRKDLLP 240

Query: 214  ----GKTSAEILDIFFEKVNFEVKDQTLMMELVPERLRGETATFDI--EADGKVYVEKGR 267
                G    EIL+ F++ + +             +R++G     D+   A G +  E G 
Sbjct: 241  YEAQGMAKEEILNYFYDTITYTRSAGGWKTPFNVDRMKGVKLISDLVDAATGAIVAEAGT 300

Query: 268  RVTARHIRQLEKDGVNFIEVPVEYIVGKVSAKDYVNEATGELIITANQEISLEALANLSQ 327
            ++T R I++L + G+   +V  E + G+  A D +NE TGE++  A  E+S   L  L +
Sbjct: 301  KMTPRVIKKLVEAGLTEQQVSTEELTGRYLAVDIINERTGEVLFEAGDELSASDLDKLEK 360

Query: 328  AGYKKLEVLFTNDLDHGPFMSETLRVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFES 387
             G  +L VL  + L+ G ++  T+  D    R  AL++IYR+MRPGEPPT E+AE+LF  
Sbjct: 361  TGVDELPVLAIDHLNVGAYIRNTMNADRNASREDALIDIYRVMRPGEPPTLESAEALFSG 420

Query: 388  LFFSAERYDLSTVGRMKFNSSIGREDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDH 447
            LFF +ERYDLS VGR+K N+ +  +  ++   L + DI+E++K L+++++G+GE+DDIDH
Sbjct: 421  LFFDSERYDLSAVGRVKMNARLNFQTDDQMRVLRKEDILEILKVLVNLKDGRGEIDDIDH 480

Query: 448  LGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFG 507
            LGNRR+RSVGE+ ENQ+RVGL+R+ERA++ER+S  ++D VMP DLINAKP +AAV+EFFG
Sbjct: 481  LGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVEIDTVMPHDLINAKPAAAAVREFFG 540

Query: 508  SSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGP 567
            SSQLSQFMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGP
Sbjct: 541  SSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGP 600

Query: 568  NIGLINSLSAFARCNEYGFLETPYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEG 627
            NIGLINSL+ +AR N+YGF+E+PYR+V++G VT+EV YLSA+EEG++V+AQANA+L  + 
Sbjct: 601  NIGLINSLATYARVNQYGFIESPYRKVIDGKVTNEVVYLSAMEEGRYVVAQANAELNADN 660

Query: 628  GFADELVTARQKGESGLHPREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQR 687
             FA +LV+ RQ GE  +   E +D +DV+  Q+VS+AA+LIPFLE+DDANRALMG+NMQR
Sbjct: 661  SFAADLVSCRQGGEYLMFRPEAIDLIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQR 720

Query: 688  QAVPTLRSEKPLVGTGIERNVAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAG 747
            QAVP ++++ PLVGTG+E  VA DSGVT VAKR G++  VDA+RIVV+  +        G
Sbjct: 721  QAVPLVKADAPLVGTGMEATVARDSGVTIVAKRSGIVDQVDATRIVVRATDSS-DSTAPG 779

Query: 748  IDIYNLTKYTRSNQNTCINQRPCVMPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPW 807
            +DIYNL K+ RSNQNTCI QRP V  G+ V  GD++ADGPSTDLGELALG+N+ +AFMPW
Sbjct: 780  VDIYNLLKFQRSNQNTCITQRPLVKVGDRVNAGDIVADGPSTDLGELALGRNVLVAFMPW 839

Query: 808  NGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDE 867
            NGYNFEDSIL++ER+V+DD FT+IHI+E   +ARDTKLG EEIT DIPNVGE AL  LDE
Sbjct: 840  NGYNFEDSILINERIVKDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNLDE 899

Query: 868  SGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGT 927
            +GIVYIGAEV+ GDILVGKVTPKGE+ +TPEEKLLRAIFGEKASDV+DTSLR+P  V GT
Sbjct: 900  AGIVYIGAEVRPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVVGT 959

Query: 928  VIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDLTEEFQILEGGLLARVRSVLLA------ 981
            +++V+VF+R GV+KD+RAL IE+ ++++  KD  +E  ILE     R++ VL+       
Sbjct: 960  IVEVRVFSRRGVDKDERALAIERAEIEKLAKDRDDERGILERSFYTRLKEVLIGQTAQSG 1019

Query: 982  -----GG--YTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRR 1034
                 GG   T+  L  + +  W +  + +E++   +E LA+ +D+       +FE K  
Sbjct: 1020 PKGMKGGTVLTDEVLAGLSKGLWRQIAIADEQVMETVENLAKVFDDSIKALQDRFENKVD 1079

Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPV 1094
            K+ +GD+L PGV+K+VKV++AVKR++QPGDKMAGRHGNKGV+S+I P EDMPY E+G PV
Sbjct: 1080 KLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRIIPQEDMPYLEDGTPV 1139

Query: 1095 DIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQ-----------ELAKLRE 1143
            D+VLNPLGVPSRMN+GQILE HLG AA G+G +I + + + +           +L  LR 
Sbjct: 1140 DLVLNPLGVPSRMNVGQILETHLGWAASGLGKQIGRAVDQYRLAIRQKAEGAPQLEALRG 1199

Query: 1144 FLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLELADL 1203
             L+  Y  G+     DI++++D ++  L  NLR G+P ATPVFDGA E  I   LE A  
Sbjct: 1200 TLKSAY--GEVTYNEDIADMTDGELLELGGNLRKGVPFATPVFDGAREEDICVHLERAGF 1257

Query: 1204 PASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1263
              SGQ TL DGRTG+ F+R VTVGY+YMLKL+HLVDDK+HARS G YSLVTQQPLGGKAQ
Sbjct: 1258 DRSGQSTLVDGRTGETFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQ 1317

Query: 1264 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPESFN 1323
            FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV+GRTK+Y+ IV G+   E G+PESFN
Sbjct: 1318 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDNFEAGIPESFN 1377

Query: 1324 VLLKEIRSLGINIEL 1338
            VL+KE+RSLG+N+EL
Sbjct: 1378 VLVKELRSLGLNVEL 1392