Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta from Alteromonas macleodii MIT1002

 Score = 2172 bits (5628), Expect = 0.0
 Identities = 1082/1342 (80%), Positives = 1209/1342 (90%), Gaps = 1/1342 (0%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQ 60
            MVYSY+EKKRIRKDFG RPQVL+IPYLLSIQLDSF+KFIE D + QYGLEAAFRSVFPI+
Sbjct: 1    MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIEIDADAQYGLEAAFRSVFPIK 60

Query: 61   SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ 120
            SY+G+SELQYVSYRLGEPVFDVKECQIRGVT+S PLRVKLRLV+FDKDA  GTVKDIKEQ
Sbjct: 61   SYSGSSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDKDAAPGTVKDIKEQ 120

Query: 121  EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180
            EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFD DKGKTHSSGKVLYNAR+IPYR
Sbjct: 121  EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR 180

Query: 181  GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQTLMME 240
            GSWLDFEFDPKDNL+VRIDRRRKLPA+IILRAL  TS EILD FF+KV+  +    LMME
Sbjct: 181  GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALEMTSEEILDTFFDKVSVRIDKDKLMME 240

Query: 241  LVPERLRGETATFDI-EADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGKVSAK 299
            +VP+RLRGETA FDI + +G V VE GRR++ARH R LEK G+  +EVP +Y++G+V A 
Sbjct: 241  VVPDRLRGETAAFDIIDGEGNVVVETGRRISARHTRALEKAGLTELEVPADYLIGRVYAA 300

Query: 300  DYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDSTTDR 359
             YVNE TGE+I++AN E++LE LA LSQAG K+ E L+ N+LDHG ++S+TLR+DS+T+R
Sbjct: 301  TYVNEDTGEVIVSANDELTLENLAALSQAGIKEFETLYINELDHGSYISDTLRIDSSTNR 360

Query: 360  ISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAEEQGT 419
            + ALVEIYRMMRPGEPPTK+AAE+LF++LFFS ERYDLS+VGRMKFN  +GRE+    GT
Sbjct: 361  LEALVEIYRMMRPGEPPTKDAAETLFDNLFFSDERYDLSSVGRMKFNRRLGREELIGAGT 420

Query: 420  LDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479
            LD+ DII VMK+LI IR+GK EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
Sbjct: 421  LDKEDIISVMKQLIMIRDGKDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 480

Query: 480  SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT 539
            SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
Sbjct: 481  SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT 540

Query: 540  RERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVNGVV 599
            RERAGFEVRDVH THYGRLCPIETPEGPNIGLINSL++FAR N++GFLETP+RR+V+GVV
Sbjct: 541  RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNDFGFLETPFRRIVDGVV 600

Query: 600  TDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDVATNQ 659
            TDE+DYLSAIEEGQF IAQAN  LTE G   D+L+  R +GE+ L P+E + YMDV+  Q
Sbjct: 601  TDEIDYLSAIEEGQFAIAQANIALTEAGELVDDLIPCRHRGETTLMPKEDIKYMDVSPQQ 660

Query: 660  VVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAK 719
            +VSIAAS+IPFLEHDDANRALMGANMQRQAVPTLR++KPLVGTG+ER +AVDSGVT VAK
Sbjct: 661  IVSIAASIIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERTIAVDSGVTVVAK 720

Query: 720  RGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVAR 779
            RGGV+  VDASRIV+KV+E+E++PGEAGIDIYNLTKYTRSNQNTCINQ+P    G+P+  
Sbjct: 721  RGGVVDYVDASRIVIKVDEDEMLPGEAGIDIYNLTKYTRSNQNTCINQKPTCSVGDPIVA 780

Query: 780  GDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCV 839
            GDVLADGPSTDLG+LALGQNMRIAFMPWNGYNFEDSIL+SERV Q+DRFTTIHIQELSC+
Sbjct: 781  GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI 840

Query: 840  ARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE 899
            ARDTKLG EEI++DIPNVGE+ALSKLDESG+VYIGAEVKGGDILVGKVTPKGETQLTPEE
Sbjct: 841  ARDTKLGPEEISSDIPNVGESALSKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEE 900

Query: 900  KLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKD 959
            KLLRAIFGEKASDVKDTSLRVPNSV GTVIDVQVFTRDGVEKDKRALEIE MQL++ KKD
Sbjct: 901  KLLRAIFGEKASDVKDTSLRVPNSVHGTVIDVQVFTRDGVEKDKRALEIEDMQLRQVKKD 960

Query: 960  LTEEFQILEGGLLARVRSVLLAGGYTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYD 1019
            LT+EF+IL  G+ AR ++ LL  G  +AKL S+ R+KW E  L +E+ Q +L+Q+A+Q+ 
Sbjct: 961  LTDEFEILADGIFARAQTALLRAGVDQAKLDSLPREKWFEIALNSEDAQLELDQIADQHA 1020

Query: 1020 ELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079
            E+K DFDKKFE KRRKITQGDDLAPGVLKIVKVYLAVKR IQPGDKMAGRHGNKGVIS I
Sbjct: 1021 EIKLDFDKKFEGKRRKITQGDDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISTI 1080

Query: 1080 NPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELA 1139
             PVEDMPYD NG PVDIVLNPLGVPSRMNIGQILE HLG+AA G+G KI++MIKEQ+ELA
Sbjct: 1081 QPVEDMPYDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAHGLGVKIDRMIKEQRELA 1140

Query: 1140 KLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLE 1199
            +LR+FL+KVY+LG+  Q VDI   +D +VR LA NLR G+PVATPVFDGA ES IK ML+
Sbjct: 1141 ELRDFLKKVYELGENHQEVDIDSFTDHEVRRLAENLRKGVPVATPVFDGARESEIKEMLK 1200

Query: 1200 LADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1259
            LAD+P SGQ+ LFDGRTG  FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
Sbjct: 1201 LADIPESGQIALFDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260

Query: 1260 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMP 1319
            GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDG+H MEPGMP
Sbjct: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP 1320

Query: 1320 ESFNVLLKEIRSLGINIELEDE 1341
            ESFNVLLKEIRSLGINIELE++
Sbjct: 1321 ESFNVLLKEIRSLGINIELEEK 1342