Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1378 a.a., DNA-directed RNA polymerase beta chain from Agrobacterium fabrum C58

 Score = 1563 bits (4048), Expect = 0.0
 Identities = 787/1358 (57%), Positives = 1029/1358 (75%), Gaps = 22/1358 (1%)

Query: 4    SYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD-PEG---QYGLEAAFRSVFPI 59
            S+  ++R+RK FG  P+V ++P L+ +Q  S+++F+  D P+G     GL A F+SVFPI
Sbjct: 6    SFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFKSVFPI 65

Query: 60   QSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TVKDI 117
              ++G S L++VSY    P FDV+EC+ R +TY+ PL+V LRL++FD D   G  ++KDI
Sbjct: 66   TDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAKSIKDI 125

Query: 118  KEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177
            KEQ VYMG++PLMT NGTF++NGTERVIVSQ+HRSPGVFFD DKGK+HSSGK+L+ AR+I
Sbjct: 126  KEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFAARVI 185

Query: 178  PYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQTL 237
            PYRGSWLD EFD KD +Y RIDRRRKLP + +L ALG    EIL  F+ K  +E      
Sbjct: 186  PYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLLMALGMDGEEILSTFYTKATYERSGDGW 245

Query: 238  MMELVPERLRGETATFD-IEAD-GKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGK 295
             +   PE L+      D I+AD G+V VE G+++T R IRQL   G+  ++   E + G 
Sbjct: 246  RIPFQPEALKNAKVITDMIDADTGEVVVEGGKKLTPRLIRQLVDKGLKALKATDEDLYGN 305

Query: 296  VSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDS 355
              A+D VN +TGE+ + A  EI  + L  + Q+G+ ++ VL  + ++ G ++  TL  D 
Sbjct: 306  YLAEDIVNYSTGEIYLEAGDEIDEKTLGLILQSGFDEIPVLNIDHVNVGAYIRNTLSADK 365

Query: 356  TTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAE 415
              +R  AL +IYR+MRPGEPPT ++AE++F SLFF AERYDLS VGR+K N  +  +  +
Sbjct: 366  NQNRQEALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRLDLDAED 425

Query: 416  EQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475
               TL + DI+ V+K L+ +R+GKGE+DDID+LGNRR+RSVGE+ ENQ+R+GL+R+ERA+
Sbjct: 426  TVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLRMERAI 485

Query: 476  KERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP 535
            KER+S  ++D VMPQDLINAKP +AAV+EFFGSSQLSQFMDQ NPLSE+THKRR+SALGP
Sbjct: 486  KERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRLSALGP 545

Query: 536  GGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVV 595
            GGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ FAR N+YGF+E+PYR+++
Sbjct: 546  GGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKII 605

Query: 596  NGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDV 655
            +G VT +V YLSA+EE ++ +AQANA+L  EG F +E V  R  GE  L PR++++ MDV
Sbjct: 606  DGKVTTDVIYLSAMEEAKYYVAQANAELDGEGAFTEEFVVCRHSGEVMLAPRDNINLMDV 665

Query: 656  ATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVT 715
            +  Q+VS+AA+LIPFLE+DDANRALMG+NMQRQAVP LR+E P VGTG+E  VA DSG  
Sbjct: 666  SPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVARDSGAA 725

Query: 716  AVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGE 775
              A+RGGV+  VDA+RIV++   E+L  G++G+DIY L K+ RSNQNTC+NQRP V  G+
Sbjct: 726  IAARRGGVVDQVDATRIVIRAT-EDLDAGKSGVDIYRLQKFQRSNQNTCVNQRPLVSVGD 784

Query: 776  PVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQE 835
             +++GD++ADGPSTDLG+LALG+N  +AFMPWNGYN+EDSIL+SER+V DD FT+IHI+E
Sbjct: 785  AISKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSIHIEE 844

Query: 836  LSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQL 895
               +ARDTKLG EEIT DIPNV E AL  LDE+GIVYIGAEV+ GDILVGK+TPKGE+ +
Sbjct: 845  FEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKGESPM 904

Query: 896  TPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKE 955
            TPEEKLLRAIFGEKASDV+DTS+R+P    GT+++V+VF R GVEKD+RA+ IE+ +++ 
Sbjct: 905  TPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIEREEIER 964

Query: 956  AKKDLTEEFQILEGGLLARVRSVL-----LAG--GY------TEAKLGSIERKKWLEQTL 1002
              KD  +E  IL+  +  R+  +L     +AG  G+      + A +    R +W    +
Sbjct: 965  LAKDRDDEQAILDRNVYGRLIDMLRGHVSIAGPKGFKKGVELSNAVVSEYPRSQWWMFAV 1024

Query: 1003 ENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062
            E+E+ Q++LE L  QYDE K+  +++F  K  K+ +GD++ PGV+K+VKV++AVKR+IQP
Sbjct: 1025 EDEKAQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQP 1084

Query: 1063 GDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAK 1122
            GDKMAGRHGNKGV+S+I PVEDMP+ E+G  VDI LNPLGVPSRMN+GQILE HL  A  
Sbjct: 1085 GDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLAWACA 1144

Query: 1123 GIGDKINQMIKEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAGLPVA 1182
            G+G KI +M++E ++   + E   ++ ++  +    ++    D+ +  LA   + G+ +A
Sbjct: 1145 GMGKKIGEMLEEYRKTMDISELRSELTEIYASEANDEVQRFDDDSLVKLAEEAKRGVSIA 1204

Query: 1183 TPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKM 1242
            TPVFDGA E  + AML+ A L  SGQ  L+DGRTG+ F+R VTVGYMYM+KLNHLVDDK+
Sbjct: 1205 TPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLNHLVDDKI 1264

Query: 1243 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1302
            HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV GRTK
Sbjct: 1265 HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK 1324

Query: 1303 MYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELED 1340
            +Y+ IV G+   E G+PESFNVL+KE+RSLG+++ELE+
Sbjct: 1325 VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELEN 1362