Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1362 a.a., DNA-directed RNA polymerase subunit beta from Acinetobacter radioresistens SK82

 Score = 1843 bits (4773), Expect = 0.0
 Identities = 938/1366 (68%), Positives = 1129/1366 (82%), Gaps = 32/1366 (2%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIE--QDPEGQ--YGLEAAFRSV 56
            M YSYTEKKRIRK+FG  PQV++ PYLLSIQ+DS+  F++  + P+ +   GL+AAFRSV
Sbjct: 1    MAYSYTEKKRIRKNFGKLPQVMEAPYLLSIQVDSYRTFLQDGKTPKNREDIGLQAAFRSV 60

Query: 57   FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKD 116
            FPI+SY+GN+ L++V Y LG+P FDV+EC +RG TY+ P+RVK+RL+I  KD    ++KD
Sbjct: 61   FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLII--KDRETKSIKD 118

Query: 117  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176
            ++EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFD DKGKTHSSGKVLY+ARI
Sbjct: 119  VREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARI 178

Query: 177  IPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQT 236
            IPYRGSWLDFEFD KD +YVRIDRRRKL A++++RALG  + +ILD+F+EKV   +   +
Sbjct: 179  IPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVMRALGYNNEQILDLFYEKVPVYLDMGS 238

Query: 237  LMMELVPERLRGETATFDI-EADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGK 295
              ++LVPERLRGE A FDI + DGKV VE+G+R+ ARH+RQ+E  G+  + VP EY+  +
Sbjct: 239  YQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLPVPDEYLYER 298

Query: 296  VSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDS 355
            ++A+D ++  +G+ +I AN  +S E +  +++ G K+  +L+TND+D G F+++TLR D+
Sbjct: 299  ITAED-ISLKSGD-VIAANTLLSHEIMVKIAEGGVKQFNILYTNDIDRGSFVADTLRADT 356

Query: 356  TTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGR---- 411
            T+ R  ALVEIY++MRPGEPPTKEAAE+LF +LFFS+ERYDLS VGRMKFN  +GR    
Sbjct: 357  TSGREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEV 416

Query: 412  ----EDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467
                +  E +G L   DII+V++ L+ IRNGKGEVDDIDHLGNRR+RSVGEM ENQFRVG
Sbjct: 417  GTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVG 476

Query: 468  LVRVERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHK 527
            LVRVERAVKERLS  + DN+ PQDLINAKP++AA+KEFFGSSQLSQFMDQNNPLSE+THK
Sbjct: 477  LVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHK 536

Query: 528  RRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFL 587
            RR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSLS +A+ NE+GFL
Sbjct: 537  RRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKTNEFGFL 596

Query: 588  ETPYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPR 647
            ETPYR+VV+G VTDEV+YLSAIEE   VIAQA++ L ++G   +ELV+ R +GE      
Sbjct: 597  ETPYRKVVDGRVTDEVEYLSAIEEVGTVIAQADSALDKDGYLTEELVSVRYQGEFVRMAP 656

Query: 648  EHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERN 707
            E + +MDV+  QVVS+AASLIPFLEHDDANRALMG+NMQRQAVPTL ++KPLVGTG+E N
Sbjct: 657  ERITHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLIADKPLVGTGMEAN 716

Query: 708  VAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQ 767
            VA DSGV  +AKRGG I+ VDASR+V++VNE+E+I GEAG+DIYNL KYTRSNQNTCINQ
Sbjct: 717  VARDSGVCVIAKRGGTIEFVDASRVVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNTCINQ 776

Query: 768  RPCVMPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDR 827
            +  V  G+ V RGDVLADGPSTD GELALGQNMR+AFM WNGYN+EDSIL+SERV+Q+DR
Sbjct: 777  KVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDR 836

Query: 828  FTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKV 887
             T+IHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEV  GDILVGKV
Sbjct: 837  LTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKV 896

Query: 888  TPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALE 947
            TPKGETQLTPEEKLLRAIFGEKA+DVKD+SLRVP+   GTVIDVQVFTRDG+EKD RAL 
Sbjct: 897  TPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALA 956

Query: 948  IEQMQLKEAKKDLTEEFQILEGGLLARVRSVLL-----AGGYT-------EAKLGSIERK 995
            IE+ QL   +KDL EE++I E     R+  +L       GG T       E  L  +E  
Sbjct: 957  IEKAQLDAYRKDLKEEYKIFEEAARERIVRLLKDQVSNGGGNTKRGEKLSEELLSGLELI 1016

Query: 996  KWLEQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLA 1055
              LE    +E +  +L Q+     E   + D+KF  K+RK++ GD+L  GVLK+VKVYLA
Sbjct: 1017 DLLEIQPSDEAIAERLTQIQVFLKEKSTEIDEKFAEKKRKLSTGDELTHGVLKVVKVYLA 1076

Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEV 1115
            VKRRIQPGDKMAGRHGNKGV+S+I PVEDMP+D NG PVD+VLNPLGVPSRMN+GQILE 
Sbjct: 1077 VKRRIQPGDKMAGRHGNKGVVSQILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILET 1136

Query: 1116 HLGLAAKGIGDKINQMIKEQQELAKLREFLQKVYD-LGDTRQRVDISELSDEDVRTLAHN 1174
            HLGLAAKG+G++I++M+K+Q+ +A+LR+FL K+Y+ +G  ++++D   L+D+++  LA N
Sbjct: 1137 HLGLAAKGLGEQIDKMLKQQRAIAELRDFLDKIYNKVGGEQEQLD--TLTDDEILKLAGN 1194

Query: 1175 LRAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKL 1234
            L  G+P+ATPVFDGA E  IK +LELA+LP SGQ  LFDGRTG+ F+RPVTVGYMYMLKL
Sbjct: 1195 LSKGVPLATPVFDGAEEGQIKELLELAELPRSGQQILFDGRTGEQFDRPVTVGYMYMLKL 1254

Query: 1235 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1294
            NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS
Sbjct: 1255 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1314

Query: 1295 DDVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELED 1340
            DDV GRT++YKNIVDGNH M+PGMPESFNVL KEIRSLGINIEL++
Sbjct: 1315 DDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKN 1360