Pairwise Alignments

Query, 182 a.a., transcription termination/antitermination protein NusG from Vibrio cholerae E7946 ATCC 55056

Subject, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

 Score = 42.7 bits (99), Expect = 3e-09
 Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 17/171 (9%)

Query: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
           KRWY++    G + R     + H++   +E  + EV V  E+++    G+R+  +   FP
Sbjct: 2   KRWYLLYCKRGEQQRA----KMHLENQSVECFYPEVCV--EKILR---GKRQMVQEPLFP 52

Query: 67  GYVLVQM-IMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAI--LNRLEKASEAPR 123
            Y+ V+    N  S+  VRS   V+ F+      P P  + + D I  L +L+       
Sbjct: 53  SYMFVRFDFENGPSFTTVRSTRGVVDFV---RLGPHP-RELQGDLIYQLKQLDCEQLKHA 108

Query: 124 PKTMFEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELE 174
            K + E G+ VRV  G FA       E D + +R  + V +  +  P+ +E
Sbjct: 109 TKQLPEKGQTVRVARGQFAGIEAIYLEPDGD-TRSIMLVKMISQQVPMSIE 158