Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., Transcription termination factor Rho from Xanthobacter sp. DMC5

 Score =  584 bits (1505), Expect = e-171
 Identities = 290/418 (69%), Positives = 356/418 (85%), Gaps = 2/418 (0%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           + L +LK+    +L+   E   +EN + LRKQ+++FAILK  A +  +I G+GV+E+LQD
Sbjct: 4   VKLQDLKSKTPVELLAFAEENEVENASTLRKQELMFAILKQLAATETEIIGEGVVEVLQD 63

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GF FLRS +++YL GPDDIYVSPSQIRRF LRTGD++ G+IR PKEGERYFALLKVNT+N
Sbjct: 64  GFAFLRSPEANYLPGPDDIYVSPSQIRRFGLRTGDTVEGQIRSPKEGERYFALLKVNTIN 123

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGN--GSTEDITARVLDLAAPIGKGQRGLIVA 178
            + P+ +R+KI F+NLTPL+ +ER+ +E     GS +D + R++D+ APIGKGQRGLIVA
Sbjct: 124 FEDPEKSRHKINFDNLTPLYPDERLKLEHDEPTGSKKDFSPRIIDIVAPIGKGQRGLIVA 183

Query: 179 PPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASR 238
           PP+ GKT+LLQNIA+SI +NHPEC L+VLLIDERPEEVT+MQR VKGEVV+STFDEPA R
Sbjct: 184 PPRTGKTVLLQNIAKSITANHPECFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVR 243

Query: 239 HVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPK 298
           HVQVAEMVIEKAKRLVEH +DVVILLDSITRL RAYNTVVP+SGKVLTGGVDANAL RPK
Sbjct: 244 HVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPK 303

Query: 299 RFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAI 358
           RFFGAARN+EEGGSLTIIATAL++TGS+MDEVI+EEFKGTGN E+ L+RK+++KRVFPAI
Sbjct: 304 RFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEVILDRKVSDKRVFPAI 363

Query: 359 DFNRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAM 416
           D  RSGTR+EELL   D L+KM++LR+I++PMG  DA+EFL+DKL  TKTN +FFD+M
Sbjct: 364 DITRSGTRKEELLVPADTLKKMYVLRRILNPMGTVDAIEFLLDKLRQTKTNQDFFDSM 421