Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., Transcription termination factor Rho from Variovorax sp. SCN45

 Score =  564 bits (1453), Expect = e-165
 Identities = 280/419 (66%), Positives = 350/419 (83%), Gaps = 1/419 (0%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           M+L ELK   VS+++K  E+L +EN+ R+RKQ+++FAI+K  AK+GE +F DGVLEIL D
Sbjct: 1   MHLNELKALHVSEVLKQAEALEIENVGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRS D+S+ A  DDIY+SPSQ+RRFNL TGD I G++R PK+GERYFAL K++ VN
Sbjct: 61  GFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVN 120

Query: 121 DDRPDNARNKILFENLTPLHANERMVMER-GNGSTEDITARVLDLAAPIGKGQRGLIVAP 179
           D  P+  ++K++FENLTPL   E+M +ER G    E+IT R++D+ APIGKGQR L+VAP
Sbjct: 121 DGPPEQNKHKVMFENLTPLFPKEQMKLERDGIKGEENITGRIIDIIAPIGKGQRALLVAP 180

Query: 180 PKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRH 239
           PK+GKT+++Q+IA +I++N+P+  +MVLL+DERPEEVTEMQR VKGEV+ASTFDEPA+RH
Sbjct: 181 PKSGKTVMMQHIAHAISANYPDVHMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPAARH 240

Query: 240 VQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKR 299
           V VAEMVIE+AKRLVE KKDVVILLDSITRLARAYN VVP+SGKVLTGGVD+NAL RPKR
Sbjct: 241 VHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDSNALQRPKR 300

Query: 300 FFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAID 359
           F GAARNVEEGGSLTII TAL+DTGS+MDEVI+EEFKGTGN E+HL+R++ EKRVFP+I 
Sbjct: 301 FLGAARNVEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNSEIHLDRRLYEKRVFPSIQ 360

Query: 360 FNRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRR 418
            NRSGTRREELL   + LQK  ILR++++ M E ++ME ++  +  TKTN EFFD MRR
Sbjct: 361 LNRSGTRREELLLAPEILQKTRILRQLMYNMDEIESMELMLKNMKATKTNVEFFDMMRR 419