Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., Transcription termination factor Rho from Sphingobium sp. HT1-2

 Score =  572 bits (1473), Expect = e-167
 Identities = 279/418 (66%), Positives = 354/418 (84%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           M+L +LK T  +DLV + E LG+E  + LRKQD++FAILKA A++G  I G+G +E+L D
Sbjct: 1   MHLKDLKKTVPADLVTMAEELGVEGASTLRKQDLMFAILKAEAENGAQIMGEGTIEVLPD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRS ++++LAGPDDIYVSP+Q+RRF LRTGD++ G+IR PK+GERYFAL K+ +VN
Sbjct: 61  GFGFLRSPEANFLAGPDDIYVSPNQVRRFGLRTGDTVEGEIRAPKDGERYFALTKLLSVN 120

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
            D PD  R+++ F+NLTPL+  +++ ++  + + +D +ARV+D+ +P GKGQR LIVAPP
Sbjct: 121 FDDPDVVRHRVNFDNLTPLYPEQKLRLDTLDPTIKDKSARVIDIVSPQGKGQRTLIVAPP 180

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           + GKT++LQNIA++I  NHPE  L+VLLIDERPEEVT+MQR VKGEVV+STFDEPA+RHV
Sbjct: 181 RVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV 240

Query: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
           QVAEMVIEKAKRLVEHKKDVVILLDSITRL RAYNTVVP+SGKVLTGGVDANAL RPKRF
Sbjct: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360
           FGAARN+EEGGSL+IIATAL+DTGS+MDEVI+EEFKGTGN E+ L+RK+A+KR+FPA+D 
Sbjct: 301 FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV 360

Query: 361 NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRR 418
            +SGTR+EELL +   L KMW+LR+I+  MG  DAMEFL+DK+  +KTN++FF  M +
Sbjct: 361 GKSGTRKEELLVEKPTLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFATMNQ 418