Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 581 a.a., transcription termination factor Rho from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  486 bits (1251), Expect = e-142
 Identities = 244/368 (66%), Positives = 299/368 (81%), Gaps = 3/368 (0%)

Query: 49  IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGE 108
           I  +GVLE++QDG+GFLRS   +YLA PDDIYVSPSQI+ F L+TGD++ G+IRPPKEGE
Sbjct: 215 ILNEGVLELMQDGYGFLRSTHYNYLASPDDIYVSPSQIKLFGLKTGDTVKGQIRPPKEGE 274

Query: 109 RYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPI 168
           +YFALLKV TVN    +  R++I F++LTPL   ER+ +         ++ R+LDL API
Sbjct: 275 KYFALLKVETVNGRTTEEIRDRIPFQHLTPLFPEERLKLTT---RPSQMSTRILDLFAPI 331

Query: 169 GKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVV 228
           GKGQRG+IVA PK GKT+LL+ IA +I+ NHPE  LM+LLIDERPEEVT+M R VK EV+
Sbjct: 332 GKGQRGMIVAQPKTGKTVLLKEIANAISENHPEVYLMILLIDERPEEVTDMARSVKAEVI 391

Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGG 288
           ASTFDE A RHV+V+ +V++KAKR+VE   DVVILLDSITRLARAYNTVVP+SGK+L+GG
Sbjct: 392 ASTFDETAERHVKVSSIVLDKAKRMVECGHDVVILLDSITRLARAYNTVVPSSGKILSGG 451

Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRK 348
           VDANALH+PKRFFGAARNVE GGSLTIIATAL+DTGSKMDEVI+EEFKGTGNMEL L+RK
Sbjct: 452 VDANALHKPKRFFGAARNVENGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRK 511

Query: 349 IAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKT 408
           +A +RV+PAID   SGTRRE+LL   DEL ++WILRK +  M   +AMEFL D++  TK+
Sbjct: 512 LANRRVYPAIDVPASGTRREDLLMDRDELNRIWILRKFMSDMNSIEAMEFLKDRMKGTKS 571

Query: 409 NDEFFDAM 416
           N+EF  +M
Sbjct: 572 NEEFLISM 579



 Score = 39.7 bits (91), Expect = 2e-07
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 2  NLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHA 43
          N+ ELK+  +S+L ++ E LG++N  +L KQD+I+ IL   A
Sbjct: 3  NIEELKDRLLSELKEIAEQLGVKNFKKLSKQDLIYKILDQQA 44