Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., transcription termination factor Rho from Magnetospirillum magneticum AMB-1

 Score =  576 bits (1485), Expect = e-169
 Identities = 284/416 (68%), Positives = 351/416 (84%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           M+L +LK    ++L+   E L +EN + LRKQD++FAILK  A +   I+GDGVLEILQD
Sbjct: 1   MHLQDLKKKTPAELLAFAEELEVENASTLRKQDMMFAILKQLADNDTPIYGDGVLEILQD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRS +++YL GPDDIYVSPSQ+RRF LRTGD++ G+IR PK+GERYFALLKVN +N
Sbjct: 61  GFGFLRSPEANYLPGPDDIYVSPSQVRRFGLRTGDTVDGQIRAPKDGERYFALLKVNNIN 120

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
            + P+  R++I F+NLTPL+ +E++ +E  + + +D+T RV+DL APIGKGQR LIVAPP
Sbjct: 121 FEDPEKVRHRINFDNLTPLYPDEKLKLEIEDPTRKDLTTRVIDLVAPIGKGQRALIVAPP 180

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           + GKT++LQN+A +I+ NHPE  L+VLLIDERPEEVT+M R VKGEV++STFDEPASRHV
Sbjct: 181 RTGKTVMLQNMAHAISLNHPEVYLIVLLIDERPEEVTDMARSVKGEVISSTFDEPASRHV 240

Query: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
           QV EMV+EKAKRLVEHK+DVVILLDSITRLARAYNTVVP+SGKVLTGGVDANAL RPKRF
Sbjct: 241 QVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360
           FGAARN+EEGGSL+IIATAL+DTGS+MDEVI+EEFKGTGN E+ L+RK+++KR FPAID 
Sbjct: 301 FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKLSDKRTFPAIDI 360

Query: 361 NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAM 416
            +SGTR+EELL     L KMW+LR+I+ PMG  DAMEFL+DKL  +K N +FF+AM
Sbjct: 361 TKSGTRKEELLVDKGILSKMWVLRRILMPMGVVDAMEFLVDKLKHSKNNGDFFEAM 416