Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 431 a.a., Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 76.6 bits (187), Expect = 1e-18
 Identities = 70/250 (28%), Positives = 117/250 (46%), Gaps = 17/250 (6%)

Query: 160 RVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEM 219
           R +D     G GQR  I A    GKTML+  + +   ++    V ++ LI ER  EVTE 
Sbjct: 141 RAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEAD----VFVIGLIGERGREVTEF 196

Query: 220 QRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLAR 272
             +++         +V +T D P+      A++    A+   +  K VV+ +DS+TR AR
Sbjct: 197 VDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYAR 256

Query: 273 AYNTVVPASG-KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVI 331
           A   V  ASG +    G  A+      R         E GS+T   T L+++  + D + 
Sbjct: 257 ALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE-GSITAFYTVLLESEEEADPMA 315

Query: 332 YEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMG 391
            +E +   +  L+L+RK+A +  +PAID  +S +R    +T     ++   +RK+   M 
Sbjct: 316 -DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKL---MT 371

Query: 392 ETDAMEFLID 401
             + ++  ID
Sbjct: 372 RLEELQLFID 381