Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 82.8 bits (203), Expect = 2e-20
 Identities = 75/239 (31%), Positives = 115/239 (48%), Gaps = 24/239 (10%)

Query: 160 RVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVL-LIDERPEEVTE 218
           R +D  A  G+GQR  I + P  GK+ LL     ++  N P+    VL LI ER  EV E
Sbjct: 144 RAIDSVATCGEGQRVGIFSAPGVGKSTLL-----AMLCNAPDADSNVLVLIGERGREVRE 198

Query: 219 MQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLA 271
                  E       +V +T D PA   V+   +    A+   ++ K VV+L DS+TR A
Sbjct: 199 FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA 258

Query: 272 RAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVE-----EGGSLTIIATALVDTGSK 326
           RA   +  A+G+    G      + P  F    R +E     E GS+T   T LV+ G  
Sbjct: 259 RAAREIALAAGETAVSGE-----YPPGVFSALPRLLERTGMGEKGSITAFYTVLVE-GDD 312

Query: 327 MDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRK 385
           M+E + +E +   +  + L+R++AE+  +PAID   + +R   ++T  +  Q   ILR+
Sbjct: 313 MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRR 371