Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., type III secretion system ATPase SctN from Escherichia coli ECRC101

 Score = 68.2 bits (165), Expect = 5e-16
 Identities = 70/257 (27%), Positives = 114/257 (44%), Gaps = 27/257 (10%)

Query: 122 DRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPPK 181
           D P +  N  L + L P +   R++      +  +   RV+D     G GQR  I A   
Sbjct: 109 DTPGDRGNLRLIDELPPSYQERRVI-----NTPLETRIRVIDGVLTCGIGQRVGIFASAG 163

Query: 182 AGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEV-------VASTFDE 234
            GKT+L+  +  +  ++    V ++ LI ER  EVTE    +K  V       V +T D 
Sbjct: 164 CGKTVLMHMLVNNTEAD----VFVIGLIGERGREVTECAESLKKSVNAAKCVLVYATSDF 219

Query: 235 PASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANAL 294
            +      A M    A+   +  K VV+ +DS+TR ARA   +     K+  G   A   
Sbjct: 220 SSVDRCNAALMATTVAEYFRDRGKRVVLFIDSMTRYARALRDM-----KLAAGEPPARRG 274

Query: 295 HRPKRFFGAARNVEE-----GGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKI 349
           +    F    R +E       GS+T   T L++ G    + + +E +   +  ++L+RK+
Sbjct: 275 YPASVFDSLPRLLERPGPTLKGSITEFYTVLLE-GEDESDPLGDEIRSILDGHIYLSRKL 333

Query: 350 AEKRVFPAIDFNRSGTR 366
           A +  +PAID  +S +R
Sbjct: 334 AGQGHYPAIDVLKSVSR 350