Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., type III secretion system ATPase SctN from Dickeya dadantii 3937

 Score = 67.4 bits (163), Expect = 9e-16
 Identities = 70/264 (26%), Positives = 119/264 (45%), Gaps = 17/264 (6%)

Query: 160 RVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEM 219
           R +D    IG GQR  + A    GKT LL  +A+    N P   ++  LI ER  E+ E 
Sbjct: 167 RAIDGLLTIGCGQRVGVFAGAGCGKTTLLAELAR----NTPCDAIVFGLIGERGRELREF 222

Query: 220 -------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLAR 272
                  Q   +  +V ST D  +    + A      A+      K V++++DS+TR AR
Sbjct: 223 LDHELDEQLRSRTVLVCSTSDRSSMERARAAFTATAIAEAFRAAGKQVLLIIDSLTRFAR 282

Query: 273 AYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVI 331
           A   +  A G+    GG+  +      R    A    + G++T + + L++  S M++ +
Sbjct: 283 AQREIGLALGEPQGRGGLPPSVYTLLPRLVERAGQTRQ-GAITALYSVLIEQDS-MNDPV 340

Query: 332 YEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMG 391
            +E +   +  + L+R++AE+  +PAID   S +R    + + D  +    +R++   M 
Sbjct: 341 ADEVRSLIDGHIVLSRRLAERNHYPAIDVLMSLSRTMSNVVERDHTRHANAVRRL---MA 397

Query: 392 ETDAMEFLIDKLAMTKTNDEFFDA 415
               +E LI        +D F DA
Sbjct: 398 AYKQVEMLIRLGEYQPGHDAFTDA 421