Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 593 a.a., transcription termination factor Rho from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  485 bits (1248), Expect = e-141
 Identities = 245/368 (66%), Positives = 301/368 (81%), Gaps = 3/368 (0%)

Query: 49  IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGE 108
           I  +GVLEI+ DG+GFLRS D +YLA PDDIYVSPSQI+ F L+TGD+I G+IRPPKEGE
Sbjct: 227 IENEGVLEIMSDGYGFLRSLDYNYLASPDDIYVSPSQIKLFGLKTGDNIKGQIRPPKEGE 286

Query: 109 RYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPI 168
           +YFALLKV +VN    +  R++I FE LTPL   ER+ +       ++ + R++DL API
Sbjct: 287 KYFALLKVASVNGKTTEEIRDRIPFEYLTPLFPEERLNLTT---RADNFSTRIVDLFAPI 343

Query: 169 GKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVV 228
           GKGQRG+IVA PK GKT+LLQ IA +IA NHPEC LM+LLIDERPEEVT+M R VK EVV
Sbjct: 344 GKGQRGMIVAQPKTGKTVLLQKIANAIAENHPECHLMILLIDERPEEVTDMARSVKAEVV 403

Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGG 288
           +STFDE A RHV+V+ MV+EKAKR+VE   DVVILLDSITRLARAYNTVVP+SGK+L+GG
Sbjct: 404 SSTFDEQAERHVKVSSMVLEKAKRMVECGHDVVILLDSITRLARAYNTVVPSSGKILSGG 463

Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRK 348
           VDANALH+PKRFFGAARNVE GGSLTIIATALV+TGSKMDEVI+EEFKGTGNMEL L+RK
Sbjct: 464 VDANALHKPKRFFGAARNVENGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELSLDRK 523

Query: 349 IAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKT 408
           ++ +R++PAID   SGTRRE+LL + +E+Q++WILRK++  M   +AMEFL+ ++  T+ 
Sbjct: 524 LSNRRIYPAIDVPGSGTRREDLLMEKEEMQRVWILRKLMSDMTSQEAMEFLLQRMKGTRD 583

Query: 409 NDEFFDAM 416
           N EF  +M
Sbjct: 584 NAEFLISM 591



 Score = 38.5 bits (88), Expect = 6e-07
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 2  NLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGE 47
          N+ ELK   +S+L ++ E LG++N   L+K D+I+AIL   A + E
Sbjct: 3  NIEELKIRLLSELKEIAEELGVKNFKSLKKDDLIYAILDQQAITPE 48