Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., Transcription termination factor Rho from Azospirillum sp. SherDot2

 Score =  594 bits (1532), Expect = e-174
 Identities = 294/418 (70%), Positives = 360/418 (86%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           M+L ELK    ++L+   E L +EN + LRKQD++FAILK  A++   IFGDGVLE+LQD
Sbjct: 1   MHLQELKCKSPAELLAFAEELQIENASTLRKQDMMFAILKQLAENDIPIFGDGVLEVLQD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRS +S+YL GPDDIYVSPSQ+RRF LRTGD++ G+IR PK+GERYFALLKVNT+N
Sbjct: 61  GFGFLRSPESNYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRSPKDGERYFALLKVNTIN 120

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
            D PD  R++I F+NLTPL+  ER+ ME  + + +++T R++DL AP+GKGQRGLIVAPP
Sbjct: 121 FDAPDKVRHRINFDNLTPLYPEERIRMEVEDPTKKNLTGRIVDLVAPLGKGQRGLIVAPP 180

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           + GKT++LQNIA SIA+NHPE  L+VLLIDERPEEVT+M R V+GEV++STFDEPA+RHV
Sbjct: 181 RTGKTVMLQNIAHSIATNHPEAYLIVLLIDERPEEVTDMARSVRGEVISSTFDEPATRHV 240

Query: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
           QVAEMVIEKAKRLVEHK+DVVILLDSITRLARAYNTVVP+SGKVLTGGVDANAL RPKRF
Sbjct: 241 QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360
           FGAARNVEEGGSLTIIATAL+DTGS+MDEVI+EEFKGTGN E+ L+RK+++KR FPAID 
Sbjct: 301 FGAARNVEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKLSDKRTFPAIDI 360

Query: 361 NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRR 418
           ++SGTR+EELL     + KMWILR+I+ PMG TDA++FL+DKL  TK+N+EFF++M +
Sbjct: 361 SKSGTRKEELLVDKGTMSKMWILRRILMPMGVTDAVDFLVDKLKHTKSNNEFFESMNQ 418