Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score =  745 bits (1924), Expect = 0.0
 Identities = 375/419 (89%), Positives = 399/419 (95%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           MNLTELKN P+S+LV L E +GLEN+AR RKQDIIF+ILK HAKSGEDIFGDGVLEILQD
Sbjct: 1   MNLTELKNKPISELVNLAEEMGLENMARARKQDIIFSILKTHAKSGEDIFGDGVLEILQD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGD+IAGKIRPPK+ ERYFALLK+  VN
Sbjct: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKIREVN 120

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
            D+P+N+RNKILFENLTPLHA +R+ MERGNGSTEDITARVLDLA+PIGKGQRGLIVAPP
Sbjct: 121 FDKPENSRNKILFENLTPLHAADRLRMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP 180

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           KAGKT+LLQNIAQSIA+NHP+C LMVLLIDERPEEVTEM RLV+GEVVASTFDEPASRHV
Sbjct: 181 KAGKTLLLQNIAQSIAANHPDCELMVLLIDERPEEVTEMHRLVQGEVVASTFDEPASRHV 240

Query: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
           QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTV+P+SGKVLTGGVDANALH+PKRF
Sbjct: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360
           FGAARNVEEGGSLTIIATAL+DTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
Sbjct: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360

Query: 361 NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRRQ 419
           NRSGTRREELLT  DELQKMWILRKIVH M E DAM+FLI KL+MTKTNDEFFDAMRRQ
Sbjct: 361 NRSGTRREELLTAQDELQKMWILRKIVHEMSEIDAMDFLISKLSMTKTNDEFFDAMRRQ 419