Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 494 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas fluorescens GW456-L13

 Score =  307 bits (786), Expect = 6e-88
 Identities = 166/382 (43%), Positives = 234/382 (61%), Gaps = 2/382 (0%)

Query: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
           +F DF L P+++  ++  GF YCTPIQA  L   L+G+D  G+AQTGTGKT AFL +   
Sbjct: 105 RFHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIIT 164

Query: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
            LL TP  + R   +PRA+I+APTREL +QI  DA  L   TGL      GG  +DKQL 
Sbjct: 165 QLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLK 224

Query: 130 KLQSG-VDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE 188
            L++   DIL+ T GR++DF ++   +L+ ++ +VLDEADRM D+GFI  +R + R+ P 
Sbjct: 225 HLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 284

Query: 189 PKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQ 248
             +R  +LFSAT +  V  LA +   +P  V +E +      +++ ++  +   K  LL 
Sbjct: 285 KSERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESQNVANENVEQHIYAVAGADKYKLLY 344

Query: 249 TLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308
            L+ +   +R I+FAN K    +I   L  D      L+GDVPQ KR + LE F +G + 
Sbjct: 345 NLVNDNGWERVIVFANRKDEVRRIEERLVRDGINAAQLSGDVPQHKRIKTLEGFREGKIR 404

Query: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368
           +LVATDVA RG+HI  ++HV N+ LP+  +DYVHRIGRTGRAGA G SISFA E+ +  L
Sbjct: 405 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQL 464

Query: 369 PAIESYIEHAIPTSDYDPSALL 390
           P+IE  +   I + +  P+ LL
Sbjct: 465 PSIEEKLGRKI-SCETPPTHLL 485