Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 487 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas simiae WCS417

 Score =  308 bits (789), Expect = 2e-88
 Identities = 166/382 (43%), Positives = 236/382 (61%), Gaps = 2/382 (0%)

Query: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
           +F DF L P+++  ++  GF YCTPIQA  L   L+G+D  G+AQTGTGKT AFL +   
Sbjct: 99  RFHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIIT 158

Query: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
            LL TP  + R   +PRA+I+APTREL +QI  DA  L   TGL      GG  +DKQL 
Sbjct: 159 QLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLK 218

Query: 130 KLQSG-VDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE 188
            L++   DIL+ T GR++DF ++   +L+ ++ +VLDEADRM D+GFI  +R + R+ P 
Sbjct: 219 HLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 278

Query: 189 PKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQ 248
             +R  +LFSAT +  V  LA +   +P  V +E E      +++ ++  +   K  LL 
Sbjct: 279 KSERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEAENVASENVEQHIYAVAGADKYKLLY 338

Query: 249 TLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308
            L+ +   +R ++FAN K    +I   L  D      L+GDVPQ KR + LE F +G + 
Sbjct: 339 NLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 398

Query: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368
           +LVATDVA RG+HI  ++HV N+ LP+  +DYVHRIGRTGRAGA+G SISFA E+ +  L
Sbjct: 399 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQL 458

Query: 369 PAIESYIEHAIPTSDYDPSALL 390
           P+IE+ +   I + +  P+ LL
Sbjct: 459 PSIETLLGRKI-SCETPPTHLL 479