Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  258 bits (658), Expect = 5e-73
 Identities = 156/444 (35%), Positives = 229/444 (51%), Gaps = 19/444 (4%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA  GL   ++  +E  G+   TP+Q  A+P +L G+D+   AQTGTGKT  F       
Sbjct: 3   FASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 71  LLTT---PAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQ 127
           L        ++     QPR +++ PTRELA Q+ +  +         +A  +GG   + Q
Sbjct: 63  LFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQ 122

Query: 128 LAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
           +  +  GVD+L+   GR++D   Q   +L+H++ +VLDEADRM D+GF+ D++ +  R+P
Sbjct: 123 VQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLP 182

Query: 188 EPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALL 247
               R N+LFSAT S  +  LA + ++NPE + V P   T  RI++ +F  +  HK ALL
Sbjct: 183 AK--RQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL 240

Query: 248 QTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDV 307
             LI     ++ ++F  TKH   ++  +L         + G+  Q  R + L  F  G V
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV 300

Query: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367
            ILVATD+AARGL I Q+ HV N++LP+  EDYVHRIGRTGRAG SG +IS    +    
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 368 LPAIESYIEHAIPTSD---YDPSALLTDLPAPL---SLRSSPQQRRTNTAGSRNSNNGGN 421
           L +IE   +  I   D   +D SA+  + P       +R+    R     G      GG 
Sbjct: 361 LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG 420

Query: 422 R--------KPQQRRPRAPRPKKE 437
           R        K +    R  RP +E
Sbjct: 421 RRDKGKDKGKEKSASGRGERPARE 444