Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  253 bits (645), Expect = 1e-71
 Identities = 152/415 (36%), Positives = 223/415 (53%), Gaps = 11/415 (2%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA  GL   ++  LE  G+   TP+QA A+P +L+G+D+   AQTGTGKT  F       
Sbjct: 3   FATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQ- 61

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
            L T      A    RA+I+ PTRELA Q+         +  L     YGG S + Q+ K
Sbjct: 62  -LLTMEGPKVAANSARALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSINPQMMK 120

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L+ GVDIL+ T GR+ID ++Q    LN +Q +VLDEADRM DLGF +++  ++R +P  K
Sbjct: 121 LRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLP--K 178

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTL 250
            R  +LFSAT S  ++ LA + +N+P  + V P     + +++ +     + K  L   L
Sbjct: 179 KRQTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFVHL 238

Query: 251 IEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDIL 310
           + +    + ++FA T++  + +   L         + GD PQ  R+R L++F   +V IL
Sbjct: 239 MRKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQIL 298

Query: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPA 370
           VATDVAARGL I  +  V N+DLP   EDY+HRIGRTGRAG +G +IS  C +    L A
Sbjct: 299 VATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSA 358

Query: 371 IESYIEHAIP---TSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNR 422
           IE      +      D++P   + D  A   +   P++ +      ++S  GG R
Sbjct: 359 IEMLTRQTLTRHMEQDFEPEHRVPDTDASGQVVKKPKKPKK----PKSSGGGGKR 409