Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  257 bits (656), Expect = 8e-73
 Identities = 140/371 (37%), Positives = 214/371 (57%), Gaps = 3/371 (0%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F +  L P ++  + + G+   TPIQA A+P +L G D+ G AQTGTGKT AF     + 
Sbjct: 3   FDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFTLPMLHK 62

Query: 71  LLTTPAAEGR-AETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
           L  + +A  +   T  RA+++ PTRELA Q+            L + + +GG   + Q++
Sbjct: 63  LSMSRSATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQIS 122

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
           KL+ GVDIL+ T GR++D  +Q + +L+ +Q ++LDEADRM D+GFI D++ +   +P  
Sbjct: 123 KLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP-- 180

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
           K++ ++LFSAT S  +++LA   + NP+ + V P   T  RI + +       K ALL  
Sbjct: 181 KEKQSLLFSATFSDDIRDLASTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAH 240

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           +I E    + ++F  TK     +   L  +      L G+  Q  R + L  F  GD+  
Sbjct: 241 IINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRA 300

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP 369
           LVATD+AARG+ I ++ HV NY++P+  EDYVHRIGRTGRAG+SG ++SF C +    + 
Sbjct: 301 LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGFMQ 360

Query: 370 AIESYIEHAIP 380
            IE + +  IP
Sbjct: 361 EIERFTKQTIP 371