Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., ATP-dependent RNA helicase Bcep18194_A5658 from Variovorax sp. SCN45

 Score =  257 bits (657), Expect = 5e-73
 Identities = 159/443 (35%), Positives = 237/443 (53%), Gaps = 29/443 (6%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F++  L   +   + + G+   TPIQ  A+PV+LSGQD+ G AQTGTGKT AF       
Sbjct: 5   FSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 71  LLTTPAAEGRAETQP-RAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
           +L    A       P RA+++ PTRELA Q+    +     T L++ + +GG     Q  
Sbjct: 65  MLKHENASTSPARHPVRALVLLPTRELADQVAQQIKLYAKYTNLRSTVVFGGIDMKPQTL 124

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
           +L+ GV++L+ T GR++D  + +   LN ++ VVLDEADRM D+GF+ D++ +   +P  
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP-- 182

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
           K R  +LFSAT S  ++ LA  ++ NP  + V    +T   +++  +  S++ K   L+ 
Sbjct: 183 KQRTTLLFSATFSPEIKRLASSYLQNPITIEVARPNETASTVEQHFYSVSDDDKRRALKQ 242

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           ++ +    +A +F N+K  C ++   L  D  R   L GD  Q +R + L  F  G+VD+
Sbjct: 243 IVRQRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVDL 302

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP 369
           LV TDVAARGL I  V  VFN+D+P + EDYVHRIGRTGRAGASG ++SFA       L 
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDARLV 362

Query: 370 A-IESYIEHAIPTSDYDPSALLTDLPA------------------PLSLRSSPQQRRTNT 410
           A IE  I+  I   + +P     D P                      +   P++R ++ 
Sbjct: 363 ADIEKLIKKKI---ELEPVEFEEDRPRGRINDGRRHWREEGEAGDARDVLDQPRERSSSL 419

Query: 411 AGSRNSNNGGNRKPQQRRPRAPR 433
           +G  ++  GG R    R P APR
Sbjct: 420 SG--DARRGGGR--PHRAPAAPR 438