Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  266 bits (679), Expect = 2e-75
 Identities = 157/398 (39%), Positives = 223/398 (56%), Gaps = 15/398 (3%)

Query: 7   TEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTA 66
           T  +F+D  L   ++  L + GFV  TPIQA A+PVLL G+D  G+AQTGTGKT AF   
Sbjct: 24  TAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLP 83

Query: 67  TFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLAST-GLKAALAYGGESYD 125
             N L         ++ +P+AI+MAPTRELAIQ+  + + L  +  GLK    YGG S  
Sbjct: 84  LLNKL-------NLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASIL 136

Query: 126 KQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRR 185
            Q+  L+SG  I++GT GR+ D   +   +L+     +LDEAD M  +GF+ D+ ++  +
Sbjct: 137 DQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQ 196

Query: 186 MPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMA 245
            PE   R+  LFSAT+   V+E+    + NPE V V    +T  +++++ +      K  
Sbjct: 197 APESAQRV--LFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDE 254

Query: 246 LLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQG 305
            +  L+E E  D +I+F  T+   E++   L A   +   L GD+PQ  RER ++   QG
Sbjct: 255 AMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQG 314

Query: 306 DVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYA 365
            +DILVATDV ARGL +P++THV+NYD+P D E Y+HRIGRTGRAG  G +I        
Sbjct: 315 VIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQI 374

Query: 366 INLPAIE-----SYIEHAIPTSDYDPSALLTDLPAPLS 398
             L  IE     S  E  +P  D    + LT L   L+
Sbjct: 375 RMLRTIERVTRSSMEEIQLPHRDKVAESRLTKLGQELA 412