Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  246 bits (628), Expect = 9e-70
 Identities = 153/401 (38%), Positives = 217/401 (54%), Gaps = 14/401 (3%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F+  GL   ++  + + G+   T IQ  A+PV+L G+D+   AQTGTGKT +F+      
Sbjct: 3   FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
           L      + + + + RA+I+ PTRELA+Q+    E     TGLK+   +GG     Q  +
Sbjct: 63  LRQ---GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQR 119

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L  GVD+L+ T GR++D Y QR      I+ VVLDEADRM D+GFI+ I  +   +P   
Sbjct: 120 LIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV 179

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTL 250
             L  LFSATLS +V+ELA   + +P  + +   Q +   I + L     + K ALL  L
Sbjct: 180 QFL--LFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHL 237

Query: 251 IEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDIL 310
           I E+  D+A+IF  TKH   ++ + L               Q  R ++LE F  G +  L
Sbjct: 238 INEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297

Query: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPA 370
           VAT VAARG+ I Q++ V NYDLP   ++YVHRIGRTGRA A G +ISF  ++   NL  
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357

Query: 371 IESYIEHAIP---TSDYDPSALLTDLPAPLS-LRSSPQQRR 407
           IES + H I       ++P       P P+S L   P+ +R
Sbjct: 358 IESRLGHLIERRVVEGFEPKK-----PVPISILNYVPKHKR 393