Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

 Score =  258 bits (659), Expect = 3e-73
 Identities = 154/429 (35%), Positives = 232/429 (54%), Gaps = 12/429 (2%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F + GL   +I  L  K +   TPIQ  A+PVLL G+D+ G AQTGTGKT AF   + ++
Sbjct: 3   FNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSLDY 62

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
               P          R ++++PTRELA QI            L     +GG   +KQ+  
Sbjct: 63  FARNPKPTPIKGC--RMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRA 120

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L +GVDI++ T GR++D   QR F +   +  VLDEAD+M D+GFI  ++ + + +P  +
Sbjct: 121 LSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLP--R 178

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTL 250
           DR N+ FSAT+   ++ LA + +N+P  V V P+  T  R++++L + +   K ALL  +
Sbjct: 179 DRQNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALLHIV 238

Query: 251 IEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDIL 310
           ++ E  DRA+IF  TKH  +++   L     +   + G+  Q +R   L+ F  G   +L
Sbjct: 239 LKTEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLL 298

Query: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPA 370
           VATD+AARG+ +  V+HV N+++P+  E YVHRIGRT RAGA G +ISF  ++    L A
Sbjct: 299 VATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKA 358

Query: 371 IE--SYIEHAIPTSDYDPSALLTDLPAPLSLR----SSPQQRRTNTAGSRNSNNGGNRKP 424
           IE  + ++  I     +    + +LP P   R     SP Q+     G R    G  +K 
Sbjct: 359 IERATKVKPEIVPLPENFLEAVRNLPKPAPQRRGPSQSPAQQAKRAEGQRRYQEG--QKA 416

Query: 425 QQRRPRAPR 433
           Q+  P   R
Sbjct: 417 QRGAPDKAR 425