Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  256 bits (653), Expect = 2e-72
 Identities = 152/438 (34%), Positives = 231/438 (52%), Gaps = 16/438 (3%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA  GL   ++  +E  G+   TP+Q  A+P +L G+D+   AQTGTGKT  F       
Sbjct: 3   FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 71  LLTT---PAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQ 127
           L        ++     QPR +++ PTRELA Q+ +  +       L +A  +GG   + Q
Sbjct: 63  LFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQ 122

Query: 128 LAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
           +  +  GVD+L+   GR++D   Q   +L H++ +VLDEADRM D+GFI D++ +  R+P
Sbjct: 123 IQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLP 182

Query: 188 EPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALL 247
               R N+LFSAT S  + +LA + ++NPE + V P   T  RI++ ++     HK ALL
Sbjct: 183 AK--RQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240

Query: 248 QTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDV 307
             LI     ++ ++F  TKH   ++  +L         + G+  Q  R + L  F    V
Sbjct: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300

Query: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367
            +LVATD+AARGL I Q+ HV N++LP+  EDYVHRIGRTGRAG SG +IS    +    
Sbjct: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 368 LPAIESYIEHAIPTSD---YDPSALLTDLP----APLSLRSSPQQRRTNTAGSRNSNNG- 419
           L +IE   +  I   D   +D S +  + P     P +     + ++    G +++N G 
Sbjct: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDTNGGR 420

Query: 420 ---GNRKPQQRRPRAPRP 434
              G  K + R+  A +P
Sbjct: 421 KDKGKDKGKARQQAAAKP 438