Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  250 bits (638), Expect = 7e-71
 Identities = 142/372 (38%), Positives = 210/372 (56%), Gaps = 8/372 (2%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA  GL   ++  L++  +   TP+QA A+P +L+G+D+   AQTGTGKT  F       
Sbjct: 3   FAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQR 62

Query: 71  LLTTPAAEGR--AETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQL 128
           L    A EG   A    RA+++ PTRELA Q+ N+      +  L     YGG S + Q+
Sbjct: 63  L----ALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQM 118

Query: 129 AKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE 188
            +L+ GVD+L+ T GR++D ++Q     N +Q +VLDEADRM DLGF ++++ ++  +P 
Sbjct: 119 MRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALP- 177

Query: 189 PKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQ 248
            + R  +LFSAT S +++ LA   +N+P  + V P   T   +++ L     + K  L  
Sbjct: 178 -RKRQTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFC 236

Query: 249 TLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308
            L+ ++   + ++FA T++  +Q+   L A+      + GD PQ  R+R L+ F   +V 
Sbjct: 237 HLLRKQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQ 296

Query: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368
           +LVATDVAARGL I  +  V N DLP   EDYVHRIGRTGRAG  G +IS  C +    L
Sbjct: 297 VLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLL 356

Query: 369 PAIESYIEHAIP 380
            AIE      +P
Sbjct: 357 AAIEVLTRQTLP 368