Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

 Score =  314 bits (804), Expect = 4e-90
 Identities = 171/386 (44%), Positives = 234/386 (60%), Gaps = 2/386 (0%)

Query: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
           +F DF L  +++  +   GF YCTPIQA  L   L GQD  G+AQTGTGKT AFL +  +
Sbjct: 92  RFHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIIS 151

Query: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
            L  TP  + R   +PRA+I+APTREL +QI  DA  L   TGL      GG  +DKQL 
Sbjct: 152 QLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLK 211

Query: 130 KLQSG-VDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE 188
            L++   DIL+ T GR++DF ++   +L+ ++ +VLDEADRM D+GFI  +R + R+ P 
Sbjct: 212 ALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 271

Query: 189 PKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQ 248
             +R  +LFSAT +  V  LA +   NP  V +EPE      +++ ++  +   K  LL 
Sbjct: 272 KSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLY 331

Query: 249 TLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308
            L+ +   +R ++FAN K    +I   L  D      L+GDVPQ KR R LE F +G + 
Sbjct: 332 NLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRIT 391

Query: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368
           +LVATDVA RG+HI  ++HV N+ LP+D +DYVHRIGRTGRAG SG SISFA E+ +  L
Sbjct: 392 VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQL 451

Query: 369 PAIESYIEHAIPTSDYDPSALLTDLP 394
           PAIE+ +   I   +  P  LL  +P
Sbjct: 452 PAIEALLGRKI-KCEMPPDELLKPVP 476