Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 606 a.a., RNA helicase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  261 bits (668), Expect = 3e-74
 Identities = 148/351 (42%), Positives = 207/351 (58%), Gaps = 10/351 (2%)

Query: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
           +F +  L P+V   +   GF   +PIQ  A+PV+LSG+DI GQAQTGTGKT AF   T  
Sbjct: 5   RFEELPLSPEVQRAIADMGFEEASPIQTEAIPVVLSGKDIIGQAQTGTGKTAAFGIPTIE 64

Query: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLA-STGLKAALAYGGESYDKQL 128
            +         ++   +A+I+ PTRELAIQ+  + + L     G+     YGG+SYD+QL
Sbjct: 65  TV-------DPSDRSVQALILCPTRELAIQVSGEIQKLAKYKQGISVVPIYGGQSYDRQL 117

Query: 129 AKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE 188
             L+ GV I+IGT GR++D  ++    L+++  ++LDEAD M D+GF +DI F+  R+PE
Sbjct: 118 RALKQGVQIVIGTPGRVMDHIQRGTLVLDNVNKIILDEADEMLDMGFREDIEFVLERIPE 177

Query: 189 PKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQ 248
             DR  + FSAT+S  + E+   +  +P  V V  ++ T   I +  F   N  K  +L 
Sbjct: 178 --DRQTIFFSATMSKPIMEMTKRYQTDPVLVKVVHQELTVTNIDQAYFEVRNSAKQEVLS 235

Query: 249 TLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308
            L++      AIIF NTK   + +   L A  +    L GD+ Q +R  ++ +F  G ++
Sbjct: 236 RLLDMYNLKSAIIFCNTKRMVDDLVTGLQARGYFSDALHGDLNQNQRSAVMNKFRNGTLE 295

Query: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISF 359
           ILVATDVAARGL +  V  VFNYDLP D E YVHRIGRTGRAG SG + SF
Sbjct: 296 ILVATDVAARGLDVENVEAVFNYDLPQDEESYVHRIGRTGRAGKSGKAFSF 346