Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 496 a.a., ATP-dependent RNA helicase Bcep18194_A5658 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  256 bits (653), Expect = 1e-72
 Identities = 137/350 (39%), Positives = 205/350 (58%), Gaps = 3/350 (0%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F++  L P +   + + G+   TPIQA A+PV+L G+D+ G AQTGTGKT AF       
Sbjct: 5   FSELSLSPAIERAVAEMGYATMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFTLPLLQR 64

Query: 71  LLTTPAAEGRAETQP-RAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
           +L    A       P RA+++ PTRELA Q+    +     T L++ + +GG     Q A
Sbjct: 65  MLKHENASTSPARHPVRALVLLPTRELADQVAEQVKLYAKYTNLRSTVVFGGMDMKPQTA 124

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
           +L+ GV++L+ T GR++D  + +   LN ++ VVLDEADRM D+GF+ D++ +   +P  
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP-- 182

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
           K R  +LFSAT S  ++ LA  ++ +P  + V     T   +++  +   ++ K  +L+ 
Sbjct: 183 KQRTTLLFSATFSPEIKRLANSYLQDPVTIEVARSNATASTVEQHFYRVEDDDKRGILKQ 242

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           ++ E    +A +F N+K  C ++   L  +      L GD  Q +R + LE F  G VD+
Sbjct: 243 ILRERGLKQAFVFVNSKLGCARLARSLEREGLNTTALHGDKSQDERLKALEAFKTGAVDL 302

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISF 359
           LV TDVAARGL I  V  VFN+D+P + EDYVHRIGRTGRAGASG ++SF
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSF 352