Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., ATP-dependent RNA helicase RhlB from Pectobacterium carotovorum WPP14

 Score =  627 bits (1618), Expect = 0.0
 Identities = 318/437 (72%), Positives = 352/437 (80%), Gaps = 11/437 (2%)

Query: 1   MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT 60
           M KTH+TE KF+DF L PQVI+ LE KGF  CTPIQALALP+ LSG+D+AGQAQTGTGKT
Sbjct: 1   MSKTHLTEQKFSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKT 60

Query: 61  LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG 120
           LAFL +TF++LL+ PA   R   QPRA+IMAPTRELA+QI +DAE L  +TGLK  LAYG
Sbjct: 61  LAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHATGLKLGLAYG 120

Query: 121 GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR 180
           G+ YDKQL  L+SGVDILIGTTGR+ID+ KQ   NL  IQ VVLDEADRM+DLGFIKDIR
Sbjct: 121 GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR 180

Query: 181 FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN 240
           +LFRRMP    RLNMLFSATLSYRV+ELAFE MNN E+V VEPEQKTGHRI+EELFYPSN
Sbjct: 181 WLFRRMPPTAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN 240

Query: 241 EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE 300
           E KM LLQTL+EEEWPDR IIFANTKHRCE IW HLAAD HRVGLLTGDV QKKR RILE
Sbjct: 241 EEKMRLLQTLLEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILE 300

Query: 301 QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA 360
           +FTQG++DILVATDVAARGLHIP VTHVFNYDLPDDCEDYVHRIGRTGRAG SG SIS A
Sbjct: 301 EFTQGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLA 360

Query: 361 CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGG 420
           CEEYA+NLPAIE+YI H IP S Y+  AL+ DLPAP  L   P+           SNNG 
Sbjct: 361 CEEYALNLPAIETYIGHGIPVSKYNSDALMNDLPAPKRLTRPPR-----------SNNGP 409

Query: 421 NRKPQQRRPRAPRPKKE 437
            R    RR  APR  ++
Sbjct: 410 RRHNAPRRSGAPRNNRK 426