Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 494 a.a., ATP-dependent RNA helicase RhlE from Methylophilus sp. DMC18

 Score =  256 bits (654), Expect = 1e-72
 Identities = 157/433 (36%), Positives = 230/433 (53%), Gaps = 18/433 (4%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FAD  L   V+  +   G+   TPIQA A+P +L G D+   AQTGTGKT  F     + 
Sbjct: 12  FADLNLCAPVLRAIADAGYTSPTPIQAQAIPYVLRGGDLLAGAQTGTGKTAGFTLPILHR 71

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
           L  TP  +  A  +PR +I++PTRELA QI            LK+ + +GG   + Q+++
Sbjct: 72  LSETPLKQ-TAAGKPRCLILSPTRELAAQIGESVTTYGKYLPLKSMVVFGGVGINPQISR 130

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L+  +DI++ T GR++D   Q+  +L+ I+ +VLDEADRM D+GFI DI+ +   +P  K
Sbjct: 131 LKKPLDIMVATPGRLLDLTNQKALDLSGIEILVLDEADRMLDMGFIHDIKKVLALLP--K 188

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTL 250
            R N+LFSAT S  +++LA   +NNP+ V V     +   I++ +      HK  ++  L
Sbjct: 189 QRQNLLFSATFSDEIKQLADNLLNNPDLVEVARRNTSNALIEQSVHMVPQSHKREMVSFL 248

Query: 251 IEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDIL 310
           I++   ++ ++F  TKH   ++   L  D      + G+  Q  R   L +F  G +  L
Sbjct: 249 IKQHQWEQVLVFTRTKHGANRLAEKLVKDGIPAMAIHGNKSQNARTAALAEFKAGGITAL 308

Query: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPA 370
           VATD+AARGL I Q+  V N++LP+  EDYVHRIGRTGRAGA+G ++S    E    L  
Sbjct: 309 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDREELKLLKD 368

Query: 371 IESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQ-RRTNTAGSRNSNNGG--------N 421
           IE  I+  IP    +         AP      P +  RT   G R +   G        +
Sbjct: 369 IEKLIKREIPKLPVE------GFVAPEKNSEEPDRPSRTQPRGQRPAPKSGQAPRDASRS 422

Query: 422 RKPQQRRPRAPRP 434
           +KP Q R   P+P
Sbjct: 423 QKPGQPRQHQPKP 435