Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 563 a.a., ATP-dependent helicase from Magnetospirillum magneticum AMB-1

 Score =  262 bits (669), Expect = 2e-74
 Identities = 161/429 (37%), Positives = 236/429 (55%), Gaps = 16/429 (3%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F D GL P+++  L + G+ + TPIQA A+PV+L G+D+ G AQTGTGKT +F       
Sbjct: 20  FEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIEI 79

Query: 71  LLTTPAAEGRAETQ-PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
           L     A GRA+ + PR++I+APTRELA Q+  + +       LK AL  GGES   Q+A
Sbjct: 80  L-----AAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHPLKKALIIGGESMSDQVA 134

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
            L  GVD+LI T GR++D +++    LN ++ +V+DEADRM D+GFI D+  +   +P  
Sbjct: 135 LLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLLP-- 192

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
           K R  + FSAT+   ++ LA   + NP+ V V         + + L       K   L+ 
Sbjct: 193 KIRQTLFFSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQALAVVEEIDKRETLRH 252

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           LI  E    A IF N K   + ++  L      V  L GD+ Q  R   LE+F +G+  +
Sbjct: 253 LIRIEEVKNAFIFCNRKRDVDVLFRSLKKHGFDVVQLHGDMAQSARGETLEKFKKGEARL 312

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP 369
           +V +DVAARG+ I  V+HVFN+D+P   EDYVHRIGRTGRAG  GH+ + A  +    + 
Sbjct: 313 MVCSDVAARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRAGMEGHAFTIASPDDGRFVG 372

Query: 370 AIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKPQQRRP 429
           AIE+ I   IP    +       +PA L L  + ++ R      +++      K  + +P
Sbjct: 373 AIEAMIGTTIPRISVE------GVPA-LDLDMTARKGRGGRGAPKDAKRPARGKDDEAKP 425

Query: 430 RAP-RPKKE 437
           R   RP+++
Sbjct: 426 RRERRPRRD 434