Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., ATP-dependent RNA helicase (NCBI) from Escherichia coli BW25113

 Score =  635 bits (1638), Expect = 0.0
 Identities = 315/417 (75%), Positives = 354/417 (84%), Gaps = 3/417 (0%)

Query: 1   MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT 60
           M KTH+TE KF+DF L P+V++ LEKKGF  CTPIQALALP+ L+G+D+AGQAQTGTGKT
Sbjct: 1   MSKTHLTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT 60

Query: 61  LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG 120
           +AFLT+TF++LL+ PA   R   QPRA+IMAPTRELA+QI  DAEPL  +TGLK  LAYG
Sbjct: 61  MAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYG 120

Query: 121 GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR 180
           G+ YDKQL  L+SGVDILIGTTGR+ID+ KQ   NL  IQ VVLDEADRM+DLGFIKDIR
Sbjct: 121 GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR 180

Query: 181 FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN 240
           +LFRRMP    RLNMLFSATLSYRV+ELAFE MNN E++ VEPEQKTGHRI+EELFYPSN
Sbjct: 181 WLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSN 240

Query: 241 EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE 300
           E KM LLQTLIEEEWPDRAIIFANTKHRCE+IW HLAAD HRVGLLTGDV QKKR RIL+
Sbjct: 241 EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILD 300

Query: 301 QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA 360
           +FT+GD+DILVATDVAARGLHIP VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSIS A
Sbjct: 301 EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA 360

Query: 361 CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSL---RSSPQQRRTNTAGSR 414
           CEEYA+NLPAIE+YI H+IP S Y+P AL+TDLP PL L   R+    RRT    +R
Sbjct: 361 CEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNR 417