Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

 Score =  270 bits (691), Expect = 5e-77
 Identities = 156/422 (36%), Positives = 229/422 (54%), Gaps = 17/422 (4%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F   GL P ++  + ++G+   TPIQ  A+P +L G+D+   AQTGTGKT  F      H
Sbjct: 3   FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62

Query: 71  LLTT-PAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
           L+T  P A+GR     RA+I+ PTRELA QI  +         +++ + +GG S + Q+ 
Sbjct: 63  LITRQPHAKGRRPV--RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
           KL+ GVD+L+ T GR++D   Q    L+ ++ +VLDEADRM D+GFI DIR +  ++P  
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
             R N+LFSAT S  ++ LA + ++NP  + V        ++ + + +   + K  LL  
Sbjct: 181 --RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSH 238

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           +I +    + ++F  TKH    +   L  D  R   + G+  Q  R R L  F  GD+ +
Sbjct: 239 MIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRV 298

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP 369
           LVATD+AARGL I ++ HV NY+LP+  EDYVHRIGRTGRA A+G ++S  C +    L 
Sbjct: 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLR 358

Query: 370 AIESYIEHAIP---TSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKPQQ 426
            IE  ++  IP      Y+P           S+++ P Q      G      GG R  QQ
Sbjct: 359 DIEKLLKKEIPRIAIPGYEPDP---------SIKAEPIQNGRQQRGGGGRGQGGGRGQQQ 409

Query: 427 RR 428
            R
Sbjct: 410 PR 411