Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 597 a.a., ATP-dependent RNA helicase CsdA (EC 5.99.1.-) from Kangiella aquimarina DSM 16071

 Score =  276 bits (707), Expect = 1e-78
 Identities = 148/363 (40%), Positives = 221/363 (60%), Gaps = 10/363 (2%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F + GL P V+  +++ G+   +PIQ+ ++PVL+SG+DI GQAQTGTGKT AF     + 
Sbjct: 10  FDELGLSPAVLKSIKQVGYEQPSPIQSASIPVLMSGKDIIGQAQTGTGKTAAFALPMLSK 69

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLAST-GLKAALAYGGESYDKQLA 129
           L          ++  + +++APTRELAIQ+    +    +  G+     YGG+ YD QL 
Sbjct: 70  L-------DAKDSNTQLLVLAPTRELAIQVAEACQSYAKNMPGMNVLPIYGGQRYDTQLR 122

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
           +L+ G  I++GT GR++D  ++   NL++++A+VLDEAD M  +GFI+D+ ++    P+ 
Sbjct: 123 QLKRGAQIVVGTPGRVMDHIRRGTLNLDNLKALVLDEADEMLRMGFIEDVEWVLGHTPDT 182

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
             R   LFSAT+   ++++A +++N PEH+ ++ +  T   I +  +  S  HK+  L  
Sbjct: 183 --RQIALFSATMPKEIKKVAEKYLNEPEHIKIQSKTSTATTIDQRYWLVSGLHKLDALTR 240

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           ++E E  D  IIF  TK    ++   L A   R   L GD+ Q  RERI+E+  +G  DI
Sbjct: 241 VLETEEFDGMIIFVRTKIATIELADKLTARGFRAEALNGDIAQNARERIVEKLKKGQSDI 300

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP 369
           L+ATDVAARGL + +++HV NYD+P D E YVHRIGRTGRAG SGH+I F        L 
Sbjct: 301 LIATDVAARGLDVERISHVVNYDIPYDTESYVHRIGRTGRAGRSGHAILFVAHRERRMLK 360

Query: 370 AIE 372
           AIE
Sbjct: 361 AIE 363