Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., Superfamily II DNA and RNA helicases from Kangiella aquimarina DSM 16071

 Score =  466 bits (1198), Expect = e-136
 Identities = 236/409 (57%), Positives = 296/409 (72%), Gaps = 2/409 (0%)

Query: 1   MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT 60
           M  +H++  +F+D GL P+++  +   GF YCTPIQA  LP+LL GQ++AGQAQTGTGKT
Sbjct: 21  MDTSHLSTIRFSDLGLDPKLLKAVADLGFEYCTPIQAKTLPLLLKGQNVAGQAQTGTGKT 80

Query: 61  LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG 120
           +AFL    N +LT P  EGR + +PR++IMAPTRELA+QI  DA  L   T LK  + YG
Sbjct: 81  IAFLLGIMNDILTLPEIEGRRKNEPRSLIMAPTRELAVQIAKDAVQLGKYTDLKIRVVYG 140

Query: 121 GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR 180
           GE ++KQ  +L  GVDILIGTTGR+ID+YK + F L  I +VVLDEADRMFDLGFIKDIR
Sbjct: 141 GEDHEKQRQQLIDGVDILIGTTGRLIDYYKTKAFGLEAIDSVVLDEADRMFDLGFIKDIR 200

Query: 181 FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN 240
           +LF RMP   DRLNMLFSATLS+RVQELA+EHMNNP+HV ++ +Q T  +I+E LFYPS 
Sbjct: 201 YLFNRMPPATDRLNMLFSATLSHRVQELAYEHMNNPQHVQIQAQQVTAKKIREALFYPSR 260

Query: 241 EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE 300
           E  + LL  L+    P++AI+F NTK   E +WA LA ++ +  LLTGDV QKKR R+L+
Sbjct: 261 EEALPLLVGLMSRLQPEKAIVFTNTKRAAEHVWACLAGNDIKAELLTGDVHQKKRLRLLD 320

Query: 301 QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA 360
           +    +V +LV TDVAARGLHI  +THVFNY LPDD EDYVHRIGRT RAGA G +ISFA
Sbjct: 321 ELKNENVSVLVCTDVAARGLHIDGITHVFNYHLPDDAEDYVHRIGRTARAGAEGDAISFA 380

Query: 361 CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPA-PL-SLRSSPQQRR 407
            E++A+NL AIE Y+ H +P  +  P  L T  P+ P+   R  P QRR
Sbjct: 381 GEDFAMNLTAIEEYVGHPLPKLEIKPEYLATLKPSLPIQQKRRHPTQRR 429