Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., ATP-dependent RNA helicase RhlE from Erwinia amylovora T8

 Score =  254 bits (650), Expect = 3e-72
 Identities = 147/413 (35%), Positives = 223/413 (53%), Gaps = 10/413 (2%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F   GL   ++  + ++G+   TPIQ  A+PV+L+G+D+   AQTGTGKT  F T     
Sbjct: 3   FDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGF-TLPLLQ 61

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
           LL++     +     RA+I+ PTRELA Q+  + +       +++ + +GG S + Q+ K
Sbjct: 62  LLSSHNPHPKGRRPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMK 121

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L+ GVD+L+ T GR++D   Q   +L+ ++ +VLDEADRM D+GFI DIR +  ++P   
Sbjct: 122 LRGGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAK- 180

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTL 250
            R N+LFSAT S  ++ LA + ++NPE V V        ++ + +     + K  LL  L
Sbjct: 181 -RQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVDKKRKRELLSLL 239

Query: 251 IEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDIL 310
           I      + ++F  TKH    +   L  D      + G+  Q  R R L  F  G + +L
Sbjct: 240 IGRGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVL 299

Query: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPA 370
           VATD+AARG+ I ++ HV NY+LP+  EDYVHRIGRTGRA A G ++S  C +    L  
Sbjct: 300 VATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRD 359

Query: 371 IESYIEHAIP---TSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGG 420
           IE  ++  IP      ++P   +   P    + +  QQ+R    G R     G
Sbjct: 360 IERVLKREIPRMAIDGFEPDPAIKAEP----IINGRQQQRGGGGGGRGRGGQG 408