Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  270 bits (690), Expect = 7e-77
 Identities = 161/429 (37%), Positives = 232/429 (54%), Gaps = 18/429 (4%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           F   GL P+++  + ++G+V  TPIQ  A+P +L G+D+   AQTGTGKT  F       
Sbjct: 3   FDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLEL 62

Query: 71  LLTT-PAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
           L+   P A+GR     RA+I+ PTRELA QI  +         +++ + +GG S + Q+ 
Sbjct: 63  LVKNQPHAKGRRPV--RALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMM 120

Query: 130 KLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEP 189
           KL+ GVD+LI T GR++D   Q    L+ I+ +VLDEADRM D+GFI DIR +  ++P  
Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQNAVKLDGIEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
             R N+LFSAT S  ++ LA + ++NP  V V        ++ + + +   + K  LL  
Sbjct: 181 --RQNLLFSATFSDEIKALAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSQ 238

Query: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
           +I +    + ++F  TKH    +   L  D  R   + G+  Q  R R L  F  GD+ +
Sbjct: 239 MIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRV 298

Query: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLP 369
           LVATD+AARGL I ++ HV NY+LP+  EDYVHRIGRTGRA A+G ++S  C +    L 
Sbjct: 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLR 358

Query: 370 AIESYIEHAIP---TSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKPQQ 426
            IE  ++  IP   T  Y+            S+++ P Q      G R    GG R  Q 
Sbjct: 359 DIERLLKKEIPRIETPGYEVDP---------SIKAEPIQNGRQGGGGR-GQGGGGRGQQP 408

Query: 427 RRPRAPRPK 435
           RR     PK
Sbjct: 409 RRAEGGAPK 417