Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., ATP-dependent RNA helicase RhlB from Dickeya dadantii 3937

 Score =  620 bits (1598), Expect = 0.0
 Identities = 317/438 (72%), Positives = 349/438 (79%), Gaps = 14/438 (3%)

Query: 1   MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT 60
           M KTH+TE KF+DF L PQVI+ LE KGF  CTPIQALALP+ LSG+D+AGQAQTGTGKT
Sbjct: 1   MSKTHLTEQKFSDFALHPQVIEALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKT 60

Query: 61  LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG 120
           LAFL +TF++LLT PA   R   QPRA+IMAPTRELA+QI  DAE L  +TGL+  LAYG
Sbjct: 61  LAFLASTFHYLLTHPAPAERQTNQPRALIMAPTRELAVQIHTDAEALAKATGLRLGLAYG 120

Query: 121 GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR 180
           G+ YDKQL  L+ GVDILIGTTGR+ID+ KQ   N+  IQ VVLDEADRM+DLGFIKDIR
Sbjct: 121 GDGYDKQLKVLEDGVDILIGTTGRLIDYTKQNHVNMGAIQVVVLDEADRMYDLGFIKDIR 180

Query: 181 FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN 240
           +LFRRMP    RLNMLFSATLSYRV+ELAFE MNN E+V VEPEQKTGHRI+EELFYPSN
Sbjct: 181 WLFRRMPSANQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN 240

Query: 241 EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE 300
           E KM LLQTLIEEEWPDR IIFANTKHRCE IW HLA+D HRVGLLTGDV QKKR RILE
Sbjct: 241 EEKMRLLQTLIEEEWPDRCIIFANTKHRCEDIWGHLASDGHRVGLLTGDVAQKKRLRILE 300

Query: 301 QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA 360
            FTQG++DILVATDVAARGLHIP VTHVFNYDLPDDCEDYVHRIGRTGRAGASG SIS A
Sbjct: 301 DFTQGNLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGCSISLA 360

Query: 361 CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGG 420
           CEEYA+NLPAIE YI H IP S Y   ALLT+LP P  L             SR  + GG
Sbjct: 361 CEEYALNLPAIEDYIGHRIPVSKYSSEALLTELPEPKRL-------------SRPRSAGG 407

Query: 421 NRKP-QQRRPRAPRPKKE 437
            R+P   RR  APR  ++
Sbjct: 408 PRRPGAPRRSGAPRNNRK 425