Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 567 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  254 bits (648), Expect = 6e-72
 Identities = 142/371 (38%), Positives = 217/371 (58%), Gaps = 11/371 (2%)

Query: 8   EHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTAT 67
           E  FAD G+  +++  +E  G+   + IQA ++P++L G D+ GQAQTGTGKT +F    
Sbjct: 4   ETLFADLGISAEILQAVEGMGYTQPSEIQAQSIPLMLEGHDVIGQAQTGTGKTASFGIPI 63

Query: 68  FNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLA-STGLKAALAYGGESYDK 126
            + +         +  QP+A+I+ PTRELA+Q+  +   L     G+ +   YGGE+ D+
Sbjct: 64  VDRV-------DSSSKQPQALILCPTRELAVQVEGEITKLAKYKKGIFSTAIYGGEAIDR 116

Query: 127 QLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRM 186
           Q+  L+ GV I++GT GR++D   +    L+ ++ +VLDEAD M D+GF +DI  +  +M
Sbjct: 117 QIRTLKRGVQIVVGTPGRVMDHMNRGTLKLDTVKTIVLDEADEMLDMGFREDIETVLSQM 176

Query: 187 PEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMAL 246
           PE  DR  + FSAT++  + +L  ++  NPE V ++ ++ T   I +  +      KM L
Sbjct: 177 PE--DRQTIFFSATMAKPIMDLTRKYQTNPEIVKIQRKELTVENISQVYYEVKPPLKMEL 234

Query: 247 LQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGD 306
           +  LI     +  ++F NTK   +++   L A       L GD+ Q +R++++ +F +G 
Sbjct: 235 ITRLINIHQFNLGVVFCNTKRATDEVTEGLIARGIMAEALHGDLSQAQRDKVMNKFRKGH 294

Query: 307 VDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAI 366
             +LVATDVAARG+ +  V  VFNYDLP D E YVHRIGRTGRAG SG +ISF      I
Sbjct: 295 CTVLVATDVAARGIDVDNVEVVFNYDLPLDEEYYVHRIGRTGRAGRSGMAISFITGRKDI 354

Query: 367 -NLPAIESYIE 376
             L  +E YI+
Sbjct: 355 FRLKDLERYIK 365